Microsatellites /Tandem Repeats database

Genome: Pantoea ananatis PA13

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
177510TGTAGACAATA-TGTAGACAATA-TGTAGACAACADesign primers
653050CGCAAA-CCCAAA-CCCAAA-CCCAAA-CCCAAA-CCCAAA-CCCAAA-CCCAAADesign primers
886077GCTCGGGAC-GCTCGGGAT-GCTCGGGAT-GCTCGGGAT-GCTCGGGAT-GCTCGGGATDesign primers
1137124TTCC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGAC-TGACDesign primers
1765122TACGCAGC-CACGCAGC-CACGCAGC-CACGCAGC-CACGCAGC-CACGCAGCDesign primers
1866963GCATAACT-GCATAACT-GCATAACTDesign primers
1949077CCTAAA-CCTAAA-CCTAAA-CCTAAA-CCTAAADesign primers
2549982AATCTGTACA-ACTTTGTACA-ACTTTGTACA-ACTTTGTACA-ACTTTGTACA-ACTTTGTACA-ACTTTGTACA-ACTTTGTACADesign primers
2756347CTGAACCG-CTGAACCG-CTGAACCG-CTGAACCGDesign primers
2797799TGGGGTT-TGGGGTT-TGGGGTT-TGGGGTTDesign primers
2844538TAACAG-AAACAG-AAACAG-AAACAG-AAACAG-AAACAG-AAACAG-AAACAG-AAACAG-AAACAGDesign primers
2891482CGTGATAAC-CGTGATAAC-CGTGATAAC-CGTGATAAC-CGTGATAACDesign primers
2955603AGGCTTTCA-GGGCTTTCA-GGGCTTTCA-GGGCTTTCA-GGGCTTTCA-GGGCTTTCADesign primers
3155621TGAAGGC-AGAAGGC-AGAAGGC-AGAAGGC-AGAAGGC-AGAAGGC-AGAAGGC-AGAAGGCDesign primers
3277574GTCTGC-CTCTGC-CTCTGC-CTCTGC-CTCTGC-CTCTGCDesign primers
3298944AACCAGG-TAGCAGG-TAGCAGG-TAGCAGG-TAGCAGG-TAGCAGG-TAGCAGG-TAGCAGG-TAGCAGGDesign primers
3927356TTCACG-GTTACG-GTTACG-GTTACG-GTTACG-GTTACG-GTTACG-GTTACG-GTTACG-GTTACG-GTTACG-GTTACGDesign primers
4237182GAGGTT-GAGGTT-GAGGTT-GAGGTT-GAGGTTDesign primers
4556236TGGTTTAC-AGGTTTAC-AGGTTTAC-AGGTTTAC-AGGTTTAC-AGGTTTACDesign primers
4556285GGTTTACA-GGCTTACA-GGCTTACA-GGCTTACA-GGCTTACA-GGCTTACA-GGCTTACA-GGCTTACA-GGCTTACA-GGCTTACADesign primers
4567763GCAATG-GCAATG-GCAATG-GCAATGDesign primers

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