Microsatellites /Tandem Repeats database

Genome: Pantoea ananatis PA13

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
91414GCTGATTGCGCTGATTGTGTTGATTGCDesign primers
177508GGTGTAGACAA-TATGTAGACAA-TATGTAGACAADesign primers
194158TGCTGTTGCTGGAGCTGTTGCTGTDesign primers
338844TCGCCG-TCGCCG-TGGCCG-CCGCCGDesign primers
445043ATCACG-ATCATG-ACCACG-ACCACG-ATCACGDesign primers
653049CCGCAA-ACCCAA-ACCCAA-ACCCAA-ACCCAA-ACCCAA-ACCCAA-ACCCAADesign primers
701140CAACGGCACCGGCACCGGCACCGGCAACGCDesign primers
886067GCCTCGGGA-CGCTCGGGA-CGCTCGGGA-TGCTCGGGA-TGCTCGGGA-TGCTCGGGADesign primers
1137121GCGT-TCCT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACTDesign primers
1765120TTTACGCA-GCCACGCA-GCCACGCA-GCCACGCA-GCCACGCA-GCCACGCADesign primers
1866962AGCATAAC-TGCATAAC-TGCATAACDesign primers
1949076CCCTAA-ACCTAA-ACCTAA-ACCTAA-ACCTAADesign primers
2549980TCAATCTGTA-CAACTTTGTA-CAACTTTGTA-CAACTTTGTA-CAACTTTGTA-CAACTTTGTA-CAACTTTGTA-CAACTTTGTADesign primers
2633610GTAAAAGCGTGAAAGCGCAAAAGCDesign primers
2756346ACTGAACC-GCTGAACC-GCTGAACC-GCTGAACC-GCTGAACCDesign primers
2797796GTCTGGG-GTTTGGG-GTTTGGG-GTTTGGG-GTTTGGGDesign primers
2844536GATAAC-AGAAAC-AGAAAC-AGAAAC-AGAAAC-AGAAAC-AGAAAC-AGAAAC-AGAAACDesign primers
2891481TCGTGATAA-CCGTGATAA-CCGTGATAA-CCGTGATAA-CCGTGATAADesign primers
2940667CCA-CCA-CCA-CCG-CCT-CCA-CCG-CCADesign primers
2955600TTCAGGCTT-TCAGGGCTT-TCAGGGCTT-TCAGGGCTT-TCAGGGCTT-TCAGGGCTTDesign primers
2972407CCAGCTCCGGCTCCAGCACCAGCTCCAGCGDesign primers
3155616ATCGATG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
3224660GCTTTCGCTTTTGCTTCCGCTTTTGCCTTCDesign primers
3277573TGTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTGDesign primers
3298942TTAACCA-GGTAGCA-GGTAGCA-GGTAGCA-GGTAGCA-GGTAGCA-GGTAGCA-GGTAGCA-GGTAGCADesign primers
3691180GTTGCTGCTGTTGCAATTGTTGCTGCTGCATTTGCTGCTGCTGAADesign primers
3727862CGCAGCCGCAGGGGCAGCCGGAGCDesign primers
3789610CTGCTGCTGCTGCTGCCGCCGCTGDesign primers
3824420ATATTGAGATGTTGAGATGTTGAGDesign primers
3905626GCCGTGCTCAAGACCGATGTCAGCGTACTCAAGACCGACGTCGCCGAGCTCAAAACGGATGTCAGCGTACTCAAGACCGACGTCDesign primers
3918081CGCGGTCTGCGTACTGCCGTAACCCGCTGTCAGCGTGCTACCGTAACCCGCTGTCTGGGTACTGCCATAGCCDesign primers
3927354ACTTCA-CGGTTA-CGGTTA-CGGTTA-CGGTTA-CGGTTA-CGGTTA-CGGTTA-CGGTTA-CGGTTA-CGGTTA-CGGTTADesign primers
3979756CTAAGGCAAATCGGCTAAGACAAATCGGCTAAGGCAAAACTGDesign primers
4066548CCGCCGTCACCGCCATCACCGCCGTCCDesign primers
4106128CATGCCGCCCATACCGCCCATGCCACCCATACCGCCDesign primers
4224423TTTTTTTTGTTTTTTTTCATTTTTDesign primers
4237179GGCGAG-GTTGAG-GTTGAG-GTTGAG-GTTGAG-GTTGAGDesign primers
4240681TGCCCTTC-TGCCCTTC-TGCCCGTCDesign primers
4283055GAA-AAA-GTA-AAA-GAA-GAA-GAA-AAADesign primers
4309805TAATTAGCGAAAAATTAGCGCAGAATTAGCAAADesign primers
4435763CAGCAACAGCTACAGCAGCAGCAGCAGAAADesign primers
4502152TATTATTATTTTAATTATTTTTATDesign primers
4556234TATGGTTT-ACAGGTTT-ACAGGTTT-ACAGGTTT-ACAGGTTT-ACAGGTTTDesign primers
4556283CAGGTTTA-CAGGCTTA-CAGGCTTA-CAGGCTTA-CAGGCTTA-CAGGCTTA-CAGGCTTA-CAGGCTTA-CAGGCTTA-CAGGCTTADesign primers
4567760ATCGCA-ATGGCA-ATGGCA-ATGGCA-ATGGCADesign primers

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