Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Helicobacter pylori PeCan18

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
5132	TTTAAAAGAGAGTTTAAAAAAGAGAGTTTAAAAAAGAGAGTT	Design primers
5221	AAAAAAAGAAAGAGTTTAAAAAAGAAAGGGTTTAAAAAAGAAAGGGCTTAAAAAAGAAAGGGCT	Design primers
7821	CATGCCGCCCATGCCTCCCATTCCGCCCATGCCACC	Design primers
20760	TTTAATCAAGATTTTTTAATCAAGTTTTTTTAATTAAGGTTT	Design primers
70280	GATTAAAAAAAGAG-AGTTAAAAAAAGAG-AGTTAAAAAAAGAG-AGTTAAAAAAAGAG-AGTTAAAAAAAGAG	Design primers
83205	TATGGCATGTATGGAATGTATGGAATG	Design primers
84405	GGCGATATGGGTGATATGGGCGACATG	Design primers
164026	CATTTTGGGATTTAGGATTTTGCGATTTAGGATTTTCTGATTTAG	Design primers
165868	GCCTTTGAGCCTTTTAGCCTTTCA	Design primers
184004	TAAACCCAACCAAACCCCACCAATCCCAAC	Design primers
216255	ATTTTCTTTTGCATGTTTTTCTTCTGCATGCTCTTTTTTTGCATG	Design primers
233277	AA-TG-AG-AG-CA-TG-AG-AG-AA-AG-AG-AG	Design primers
253608	CCCTGTGGTGCGCGATGTGGTGCGCTCTGTGGTGGG	Design primers
263188	GATAATGAAGAAAATGAAGAAAATGAA	Design primers
289054	CCCCAATAT-CCCCAATAT-CCCTAATAT	Design primers
317130	TGATGGAGG-CGATGGAGG-CGATGGAGG	Design primers
334490	GTTTTCTTG-GGTTTCTTG-GGTTTCTTG-GGTTTCTTG	Design primers
346597	ATAAAAATAATC-AATAAAATAATC-AATAAAATAATC-AATAAAATAATC-AATAAAATAATC	Design primers
389011	GTTTTTCTTTTA-AATTTTCTTTTA-AATTTTCTTTTA	Design primers
393691	TTCATTTAAAGCTTCTTCATTGGAAACTTCTTCATTTAAATGGTC	Design primers
403633	CAACGCTAACAACGCCAACAACGCTAATAACGCTAA	Design primers
421908	CAAGAAGAA-AAAGAAGAA-AAAGAAGAA	Design primers
447525	TATGGTTTT-GATGGTTTT-GATGGTTTT	Design primers
520842	GCTTTTTTTAGCTTCTTCTAACTTTTTTTT	Design primers
577043	TGGGGGTGTGGGTGGGGTGGGGGG	Design primers
628726	ATTTGCGCGATTTTTTGGGCGATTTTTTGCGCGCTT	Design primers
645006	CCATAAGGCATGAAACCATAGGGCATGTAATAATAAGGCATGTAA	Design primers
658935	GCGATCGTAATTAACCCTCAA-ATCATCATAATTAACCCTCAA-ATCATCATAATTAACCCTCAA-ATCATCATAATTAACCCTCAA-ATCATCATAATTAACCCTCAA-ATCATCATAATTAACCCTCAA	Design primers
669486	AAAAATAAAAAAGAAGAAAAGAAAA	Design primers
696508	GCTTGTGGTTCTCTAGTTTGTGGCTCTTTAGCTTGAGGCTCTCTG	Design primers
727456	CAAAACCAATACCAAAACCAATAC	Design primers
770592	TGGCTA-TGGCTA-GGGCTA-TGGCGA	Design primers
782811	AAAATTCTCAAAAATCTCAAGATTCTC	Design primers
790717	AACAAAAACAACAAAAAAAACAAT	Design primers
866965	CGCGTTTAATTCTGTGTTTAATTCTGTGTTTAATTC	Design primers
890883	TT-TT-TT-TT-TT-TG-AT-TT-TT-AT-TT-TT	Design primers
912799	TAAAACAAAGGGTTT-AAAAACAAAGAATTT-AAAAACAAAGAATTT-AAAAACAAAGAATTT	Design primers
912871	AAGAAAGAAAGTTCA-AAAAAAGAGAGTTTA-AAAAAAGAGAGTTTA-AAAAAAGAGAGTTTA	Design primers
934957	TCTTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT-ATGTTTATT	Design primers
953463	TCTTTA-TCTTTA-TTTTTA-TCTTTA	Design primers
1019108	TTTTTTTTTGATTTTTCTTTTTTTC	Design primers
1032861	AGATGAAGAAGAATATGAAGATGA	Design primers
1043660	GGGATTGTGTGGTTT-GTTCTTGTGTGGTTT-GTTCTTGTGTGGTTT-GTTCTTGTGTGGTTT-GTTCTTGTGTGGTTT-GTTCTTGTGTGGTTT-GTTCTTGTGTGGTTT-GTTCTTGTGTGGTTT	Design primers
1067530	TTAAGAA-TAAAGAA-TAAAGAA-TAAAGAA	Design primers
1067580	TAAAAGAATAAAGAA-TAAAAGAATAAAGAA-TAAAAGAATAAACCC	Design primers
1071332	AAAGTTTTTAGAGTTTGAAAAGAATTTTAGAGTTTGAAAAGAATTTTAGAGTTTGAA	Design primers
1071572	TGGCAATC-ATTCAATC-ATTCAATC-ATTCAATC-ATTCAATC-ATTCAATC-ATTCAATC-ATTCAATC	Design primers
1071637	TTCTAGCA-TTCTAGCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA-TTCTATCA	Design primers
1071774	TCAATCAT-TCAATCAT-TCAATCAT-TCAATCAT-TCAATCAT-TCAATCAT	Design primers
1071823	CTAGCATT-CTAGCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CAATCATT-CTAGCATT-CTAGCATT	Design primers
1071896	TATCAAGC-AATCAAGC-AATCAAGC-AATCAAGC-AATCAAGC-AATCAAGC-AATCAAGC	Design primers
1072013	CTTTTTATTATT-CCCTCTTTTATT-CCCTCTTTTATT-CCCTCTTTTATT-CCCTCTTTTATT-CCCTCTTTTATT	Design primers
1106643	ATCAAAAAGAGTT-ATAAAGAAGAGTT-ATAAAGAAGAGTT-ATAAAGAAGAGTT-ATAAAGAAGAGTT-ATAAAGAAGAGTT	Design primers
1109587	AAAGAAGAAGCGGAAAAAGAAGCGAAAGAAGAAGAT	Design primers
1131131	TTTTTTGGGTGTTTTGGGTGTTTTGGG	Design primers
1145554	CCCTTAAGGGGTTTAAAG-AATTTAAGGGGTTTAAAG-AATTTAAGGGGTTTAAAG-AATTTAAGGGGTTTAAAG	Design primers
1147520	TTTTCTAAATTTTCTAAGGTTTCTAAA	Design primers
1201626	TAGTAAAAACT-AAAATAAAACT-AAAATAAAACT-AAAATAAAACT-AAAATAAAACT-AAAATAAAACT-AAAATAAAACT-AAAATAAAACT	Design primers
1208154	TATTTTCCTA-AATTTTCCTA-AATTATCCTA	Design primers
1240356	AAGATTAAACGAAAATTAAATGAAGATTAAATC	Design primers
1249844	GCTTGTCTTTTGTTTTTCTTGTTCTGTCTTTTGTTGTTCTTGTTCTGTCTTTTGTTTTTCTTG	Design primers
1249940	GCTTGTCTTTTGTTTTTCTTG-TTCTGTCTTTTGTTTTTCTTG-TTCTGTCTTTTGTTGTTCTTG	Design primers
1277914	CCTAATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT-AAGTATTT	Design primers
1301630	TAACCCATATCACCCATATAAGCCATA	Design primers
1309480	AAAATAAAGAGTTCAAAACAAAGGGTTCAAAAAAGAGAGTTC	Design primers
1309620	CCCTAAAACAAAGGG-TTCAAAAACAAAGGG-TTCAAAAACAAAGGG-TTCAAAAACAAAGGG-TTCAAAAACAAAGGG-TTCAAAAACAAAGGG-TTCAAAAACAAAGGG	Design primers
1309739	GT-TC-AA-AA-AA-AG-AA-AG-TT-CA-AA-AA-AC-AA-AG-GG-TT-CA-AA-AA-AG-AA-A	Design primers
1309947	AAAGAGTTTAAAACAAAAAGGTTTCAAAACAAAGAGAGTTTAAAAAAC	Design primers
1309996	AAGAGAGTTTAAAAAACA-AAGAGAGTTTAAAAAACA-AAGAGAGTTTAAAAAAGA	Design primers
1310057	CAAAAAAAGGAGTT-TCAAAAAAGGAGTT-TCAAAAAAGGAGTT	Design primers
1312450	AACGAAGATT-AAACAAGATT-AAACAAGATT-AAACAAGATT	Design primers
1323035	GGCATGCCGATTGAATGCATGCTGATTGAATGCATGCTGATTAAA	Design primers
1373513	GCTATTTTTAGGGATTTTTAGAGATTTTTA	Design primers
1374707	TTATTAGT-ATTTATGT-ATTTATGT-ATTTATGT-ATTTATGT-ATTTATGT-ATTTATGT-ATTTATGT-ATTTATGT-ATTTATGT-ATTTATGT-ATTTATGT	Design primers
1392269	AACCCAAAGAAGAGCCTAAAGAAGAACCCAAGAAAG	Design primers
1392324	AACAAA-ACCCAA-ACCCAA-ACCCAA-ACCCAA-ACCCAA	Design primers
1392364	AAACCTAAACCCAAGCCAAAACCCAAGCCTGAACCC	Design primers
1392427	CCTGAACCCAAGCCAAAACCCAAGCCTGAACCCAAA	Design primers
1393037	ACAAAAAAAAAAAAAAAAACAAAA	Design primers
1454034	ACATTTAAATGCATTAAAATACATTGAAAT	Design primers
1499636	AAAAACGCTAAAAGCGCTAAAAACGCC	Design primers
1533894	TGGGTTTGGGCTTAGGTTTTGGTTTGGGTT	Design primers
1546452	AAAACACCCCAAACACCCAAAGCACCC	Design primers
1556798	TGTTTTCATTGCTTTCATTGATTTCATTATTTTCAT	Design primers
1557959	ACA-CCA-TGA-ACA-ACA-ACA-CCA-AGC-GCA-ACA-ACA-GCA-ACA-ACA-ACA	Design primers
1570642	GAAAAAAA-GAATAAAA-GAATAAAA-GAATAAAA-GAATAAAA	Design primers
1576789	GTGCGGGTTAATGAAAGGGTTAATAAAAGGGTTAATGAAAGGGTTAATAAAAGGGTTAATGAAAGGGTTAATGAAAGGGTTAATAAAAGGGTTAAT	Design primers
1576886	AAAGGGTTAATA-AAAGGGTTAATA-AAAGGGTTAATA	Design primers
1576923	AAGAGGGAATAA-AAGAGGGAATAA-AAGAGGGAATAA-AAGAGGGAATAA	Design primers
1577034	GCGTTGCT-TGATTGCT-TGATTGCT-TGATTGCT-TGATTGCT-TGATTGCT	Design primers
1577090	TGATAGAATGCTAGAA-TGCTAGAATGATTGAA-TGATTGAATGATTGAA-TGATTGAATGATTGAA-TGCTAGAATGCTAGAA-TGATTGAATGATTGAA-TGATTGAATGATTGAA-TGATTGAATGATAGAA-TGATAGAATGATAGAA-TGATAGAATGATAGAA-TGATAGAATGATAGAA-TGATAGAATGATAGAA-TGATAGAATGATAGAA-TGATAGAATGATAGAA-TGATAGAATGATAGAA-TGATAGAATGCTAGAA-TGCTAGAATGATTGAA-TGATTGAATGATTGAA-TGATTGAATGATTGAA-TGATTGAATGATTGAA-TGCTAGAATGCTAGAA-TGATTGAATGATTGAA-TGCTAGAATGCTAGAA-TGATTGAATGATTGAA-TGCTAGAATGCTAGAA-TGATTGAATGATTGAA-TGATTGAATGATTGAA	Design primers
1577705	TCCATTCTTTTCAAACTCT-AAAATTCTTTTCAAACTCT-AAAATTCTTTTCAAACTCT-AAAATTCTTTTCAAACTCT-AAAATTCTTTTCAAACTCT-AAAATTCTTTTCAAACTCT-AAAATTCTTTTCAAACTCT-AAAATTCTTTTCAAACTCT-AAAATTCTTTTCAAACTCT	Design primers
1577877	AAATTCCTTTCAAACTCTA-AAATTCTTTTCAAACTCTA-AAATTCTTTTCAAACTCTA-AAATTCTTTTCAAACTCTA-AAATTCTTTTCAAACTCTA-AAATTCTTTTCAAACTCTA-AAATTCCTTTCAAACTCTA-AAATTCTTTTCAAACTCTA-AAATTCTTTTCAAACTCTA-AAATTCTTTTCAAACTCTA	Design primers
1581721	AAATGTTTTTT-CAATCTTTTTT-TAATCTTTTTT-TAATCTTTTTT-TAATCTTTTTT	Design primers
1582153	AAAGTTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT-TATTCTT	Design primers
1619217	TTTTTTTTATTTTGTTATTTTTGTT	Design primers
1636828	ATTAAAG-ATTAAAG-ACTAAAG-ATTAAAA	Design primers
1658246	CTTTTTT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT-AGTGATT	Design primers
1660629	TTAGTGATGAGTGATGAGTGATTAGTGATTAGTGT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

5132

TTTAAAAGAGAGTTTAAAAAAGAGAGTTTAAAAAAGAGAGTT