Microsatellites /Tandem Repeats database

Genome: Mycobacterium smegmatis str. MC2 155

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
169018CGGGCTCGG-CGGGCTCGG-CGGGCTCGG-CGGGCTCGGDesign primers
349501AGGAGCTGGATCGAT-AGGAGCTGGATCGAT-AGGGGCTGGATCGAT-AGGGGCTGGATCGATDesign primers
954405CCGTTGCCG-CCGTTGCCG-CCGTTGCCGDesign primers
954962GCCGTTGCC-GCCGTTGCC-GCCGTTGCCDesign primers
955647CCGTTGCCG-CCGTTGCCG-CCGTTGCCGDesign primers
1029196TCAGCGAATGTCAGCGAAGGTCAGCGAAGGDesign primers
1238308GACGTCAAG-GACGTCAAG-GACGTCAAGDesign primers
1326565CTGGATGG-CTGGATGG-CTGGATGG-CTGGATGG-CTGGATGGDesign primers
2103432CGCGACCGA-CGCGACCGA-CGCGACCGADesign primers
2185124CAGCCACAACCG-CAGCCACAACCG-CAGCCGCAACCGDesign primers
2503376TGCTGCCCGTACTGG-GGCTGCCCGTACTGG-GGCTGCCCGTACTGGDesign primers
2644199GCCTCGGTCCCAGCGTCGGTCCCAGCGTCGGTCCCADesign primers
2815255TCGACATCCCCG-TCGACATCCCCG-TCGACATTCCCGDesign primers
3005805TGGCTTCG-TGGCTTCG-TGGCTTCGDesign primers
3125658GGCCATCGCGGGGCCGTCGCGGGGCCGTCGCGGDesign primers
3282847CGAGCTGGACTCCGAGTTGGACTCCGAGTTGGACTCDesign primers
3683276GCGGGAGCCGGAGCAGGC-GCGGGAGCCGGAGCAGGC-GCGGGAGCCGGAGCGGGCDesign primers
4369512AAGCCCGAACCCAAGCCGGAACCCAAGCCCGAGCCCAAGGCCGAACCCDesign primers
4377890TACGACGTGTAAGTCGGCTCGCCGA-CGCGACGTGTAAGTCGGCTCGCCGA-CGCGACGTGTAAGTCGGCTCGCCGADesign primers
4379001AACTCAGCCGCTACATCCACTTGGC-GGCTCAGCCGCTACATCCACTTGGC-GGCTCAGCCGCTACATCCACTTGGC-GGCTCAGCCGCTACATCCACTTGGCDesign primers
4432085TGCACCGCGAGCTCCGCGCGTTGCACCGTGAGCTCCGCGAGTTGCACCGTGAGCTCCGCGAGTDesign primers
4432281GGTGCCTT-GGTGCCTT-GGTGCCTTDesign primers
4432323TGCCTTGG-TGCCTTGG-TGCCTTGGDesign primers
4711670TCGTCGGAG-TCGTCGGAG-TCGTCGGAGDesign primers
4711948CTCGTGGTC-CTCGTGGTC-CTCGTGGTCDesign primers
4714253GGTTCGGCA-GGTTCGGCA-GGTTCGGCADesign primers
4834874CTTGCTTGT-CTTGCTTGT-CTTGCTTGTDesign primers
5114379GTGGCCGTCTTGGTGACCGTCTTGGTGGCCGTCTTGDesign primers
5140552GGTTGAGGTGGGCTGAGGTGGGCTGAGGTGDesign primers
5209793CGGGCTCGG-CGGGCTCGG-CGGGCTCGGDesign primers
5226479TCTTTGCACCGCGAGC-ACTTTGCACCGCGAGC-ACTTTGCACCGCGAGCDesign primers
5227319ACGCTCGCGGTGCCGGGT-GCGCTCGCGGTGCCGGGT-GCGCTCGCGGTGCCGGGTDesign primers
5344427CAGGCCGAGGTTCCGGCCGAGGTTCAGGCCGAGGTTDesign primers
5517050CGCACCTTTCGCACCGCGCACCTTTTGCACCGCGCACCTTTTGCACCGDesign primers
5552451TCGGCCTCGTCG-CCGGCCTCGTCG-CCGGCCTCGTCGDesign primers
5673703GGTTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCTDesign primers
5853305GTGACGCC-GTGACGCC-GTGACGCCDesign primers
5900032CTGACCCC-CTGACCCC-CTGACCCCDesign primers
6129975GGGCACTGACAA-GGGCACTGACAA-GGGCACTGGCAADesign primers
6333674ACCACG-ACCACG-ACCACG-ACCACGDesign primers
6480628CCGAAAAGC-CCGAAAAGC-CCGAAAAGC-CCGAAAAGC-CCGAAAAGCDesign primers
6488664CCCGCA-CCCGCA-CCCGCA-CCCGCADesign primers
6492987CACCGGGCCGGTCACCGGGCCAGTCACCGGGCCAGTDesign primers
6555832CCGGTGGTC-CCGGTGGTC-CCGGTGGTCDesign primers
6561407GTCGACTGAACTG-GTCGACTGAACTG-GCCGACTGAACTGDesign primers

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