Microsatellites /Tandem Repeats database

Genome: Mycobacterium smegmatis str. MC2 155

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
51870CACGATCAGGATCGCGATCACGATDesign primers
56482CCACCACGACCAGCACCACCAGCADesign primers
58794CGGGTATCCGCCCTGGTCCGGGTAACCACCCTGGTCGGGGTATCCACCCTGATCCGGATAGCCGCCCTGGTCDesign primers
75530CGGCGGCGGCGGAGGCGGCGGCTGDesign primers
120359CTCGACCTGGACATCGACGTCGACDesign primers
168953GGTGTCGGTGGCGGTTTCGGTGGCDesign primers
169004GTCGACGGGCTCGACGGGCTCGGCGGGCTCGGCGGGCTCGGCGGGCTCGGCGGGDesign primers
169068TCGGCAGGCTCGGCGGGCTCGGCAGGTDesign primers
193431TTCGGCAGCTTCGGCTGCTTCAGCAGCDesign primers
227650CGGCCT-CGGCCT-CGGTCT-CGACCTDesign primers
227711GGCCTCGGCCTGGACCTCGGTCTCGACCTCDesign primers
252671CATCATGGTCTTCATGGTCTTCATGGTDesign primers
282549CTGCGGCGGCTGAGGCGGCTGAGGCGGDesign primers
349499GCAGGAGCTGGATCG-ATAGGAGCTGGATCG-ATAGGGGCTGGATCG-ATAGGGGCTGGATCGDesign primers
610084GGTCGCCACGGTCGCCGCGGTGGCCACDesign primers
722480CGACGACCACGACCACCACGCCGACCADesign primers
773153GAGTGCGAGTGGGAATGCGAATGCDesign primers
781076GTGGTCGGCGGCGCCGTGGTGGTCGGCGCTGTGGTCGTCGGCTGCDesign primers
781136GTC-GTC-GTC-GGT-GTG-GTC-GTG-GTG-GTG-GTC-GTC-GTG-GTC-GTG-GTG-GTC-GTC-GTC-GTG-GTG-GTGDesign primers
787611CTCGTCTCGCTTCGTCTCGCCTCGCDesign primers
790842GCACCTGCGCCTGCCCCTGCACCGDesign primers
791111CGAGCCCGAACCAGAGCCCGAGCCDesign primers
791964TCGACGTCGTGGACGACGTCGTGCTCGACGTGGTCGDesign primers
852774CGGCCACCAGCACCGCCACCACCAGGGCCGCCAGCADesign primers
931959GTC-GTC-CTC-GTC-TTC-GTC-CTC-GTCDesign primers
953369GCCGTCGCCGCCGTTGCCGCCGTTGCCDesign primers
953853GCGGTGGCCGTGCCGGTGGCGTTGDesign primers
954403CACCGTTGCCGCCGTTGCCGCCGTTGCDesign primers
954535TGCCGCCGTTGCCGCCGTTTCCACCGTTGCCGCCCTTGCCGCCGTTGCCGAGGCDesign primers
954960CAGCCGTTGCCGCCGTTGCCGCCGTTGDesign primers
955646ACCGTTGCC-GCCGTTGCC-GCCGTTGCCDesign primers
955723CGCCGCCAC-CGCCGCCAC-CGCCGCCGC-CGCDesign primers
955991GCCGCCCGTTCCGCCCGTGCCGCCGGTDesign primers
1005301GCCGAGGCCGCCGCCGAGACCGCCTCGGAGGCCGCCGCCGAGACCGCCDesign primers
1005376GCCGCCAAGAAGGCCGCCCCCGCCAAGAAGGCCGCTCCGGCCAAGAAGGCCACCDesign primers
1011416TCGAGCGCGTCGAGCGCATCGCGCGCGDesign primers
1022756TCGACGAGGACGACGAGGTCGACGAGGDesign primers
1029194GTTCAGCGAATGTCAGCGAAGGTCAGCGAADesign primers
1033384CCGACAAGTCGGACAAGTCCGACAAGGCCGACAAGGDesign primers
1036639GTGGCGATCGTGGTGATCGTGGCGCTCDesign primers
1061631TTCGTCGCGTTCGGCGCGCTCGTCGCGDesign primers
1065707TGGCCGCGGCCGTGGCCATGGGCGDesign primers
1136318GCGTTC-GCCTTC-GCCTTC-GCGTTCDesign primers
1238307CGACGTCAA-GGACGTCAA-GGACGTCAADesign primers
1253865GTGGTCGGCGGAGTGGTTGACGGAGTGGTCGGTGGADesign primers
1326564CCTGGATG-GCTGGATG-GCTGGATG-GCTGGATG-GCTGGATGDesign primers
1388913TCGGCAGCGGCATCAGCATCGGCGDesign primers
1432839ATC-GTC-GTC-GTC-CTC-GTC-ATC-GTCDesign primers
1506212GCCGACGGTGACCAACCCGGCGGTGCCCAACCCGACGGTGCCCATDesign primers
1512122GCTGCTGCTGATCCTGCTGCTGTTDesign primers
1569184GCCCGCGGCCGCGCCCGGGCCCGTDesign primers
1582946ACCGCAACCGAAACCGCAACCGCADesign primers
1616867CAAGGCCGACGAAAGGGCCGACGAGAAGGCCGACGADesign primers
1650975CGGCCGTGGCCGCCGCCGAGGCCGDesign primers
1674768GCCACGGCCACCACCACGGCCACGDesign primers
1710289CGGCGACGTGGTGGTCGTCGTCGTGGTGGTGGTCGGCGTGGTGGTDesign primers
1713392GTCGAAGTGGAACTCGAAGTAGAADesign primers
1721860TGCTCGACTCCT-TGCTCGACTCCT-TGCTCGACGTCTDesign primers
1731342CGGCCGCGGTCGAGGCCGAGGCCGDesign primers
1757299GGGGCTGGCCGCGGTGCTGGCCGCGGGGGCGGCCGCDesign primers
1770279GCGGTGCTGTGCCGCA-GCGGTGCTGTGCCGCA-GCCTTGCCGTGCCGCADesign primers
1779808CGTCGGTGTCGGCTTCGGTGTCGGCCTCGGDesign primers
1929837GGCGGCGACGGCGGCGTCGGCGACDesign primers
2009693CGACTCCGGATGCGCCTCGGGATGCGACTCGGGGTGDesign primers
2083960AC-CG-CG-AC-GG-CG-AC-CG-CG-AG-CG-CGDesign primers
2103431CCGCGACCG-ACGCGACCG-ACGCGACCGDesign primers
2132848GGCGACGGCGATGCCGACCGCGACDesign primers
2185121CCACAGCCACAACCGCAGCCACAACCGCAGDesign primers
2269266ATAGGCTCTATAGCCTCTATAGGCTCCDesign primers
2464682TGCTGTCTCGGCCACTGTCTCGGCCGCTGTCTCGGTDesign primers
2473419GGCCGCCAAGAAGGCACCGGCCAAGAAGGCCGCCGCCAAGAAGACDesign primers
2473471AAGGCTGCGGCGAAGAAGGCCCCGGCCAAGAAGGCCGCGACCAAGDesign primers
2473648AAGGCTCCGGCCAAGAAGGCCGCCGCCAAGAAGGCCCCGGCCAAGDesign primers
2503366CCCGTACGGCTGCTG-CCCGTACTGGGGCTG-CCCGTACTGGGGCTG-CCCGTACTGGGGCTGDesign primers
2574674TTGCCCTTGCGCTTGCCCTTTCCCTTGCCADesign primers
2574705TGCCGTCGCCGTTGCCGTTGCCATDesign primers
2642423CCGCGGCCTCGGCCTCGGCCGCGCDesign primers
2644198CGCCTCGGTCCCAGCGTCGGTCCCAGCGTCGGTCCCDesign primers
2669344CTCGTCTGATCGCGTGTGATCTCGGCCGATDesign primers
2699287CGAATGGTAGGCCCCGCGTGGTAGGCCCAGCATGGTAGGCCCDesign primers
2703000ATCGGCATGGGCATCGGCCTCGGCDesign primers
2706777CGCGGACGACGCCGAGGACGACTCGGCGGGCGACGCDesign primers
2775041CGACGAGGACGACGACGCCGACGCDesign primers
2785934CGACCACCACGCCCGCGACCACCACGGCCGCGACGACGACGACCGDesign primers
2796248AGCGCCAGCCCCAGGGCCAGCGCCDesign primers
2797929GTCGCTGTCGCCGCCGCTGTCGCCDesign primers
2813199CGA-CGA-CGA-CCA-CTA-CGA-CGA-CCA-CTA-CGADesign primers
2813273ACGACGACGGCCCGCACGACGACGGTCCGCACGACGACCGTGCGCDesign primers
2815253CCTCGACATCCCCGTCGACATCCCCGTCGACATTCCDesign primers
2902915AACAAGGGCGGCAACAACCGCGGCAACAAGGGCGGCDesign primers
3005804CTGGCTTC-GTGGCTTC-GTGGCTTCDesign primers
3024029AAAGGGGCGTGACAAGGGGCTTGAAAAGGGGAGTGGDesign primers
3027927GTGCTGGCGGTGCTGTCGCTGCTGGCGDesign primers
3044116GGCATCGGCTTCGGCCTCGGCGTCDesign primers
3125655CGAGGCCATCG-CGGGGCCGTCG-CGGGGCCGTCG-CGGGGCCGTCGDesign primers
3138869GCG-GCG-GTG-GTG-GCG-GTG-GCG-GCG-GCGDesign primers
3229053TCGCCGACGCCGTCGCCGACGCCGDesign primers
3282844CTTCGAGCTGGA-CTCCGAGTTGGA-CTCCGAGTTGGA-CTCCGAGCTGGADesign primers
3283128TGCCGCCGTTGCCACCGTTTCCGCCGTDesign primers
3283292CCGCCGTCGCCGCCGCGGCCGCCGDesign primers
3356086TCGACG-TCGGCG-TCGGCG-CCGACGDesign primers
3401877AGTCCTCGC-AGTCCTCGC-AGTCCTCAC-AGTCCTCGCDesign primers
3558148AGGGGCGGGGGCAGGAGCAGGGACDesign primers
3594824GTCGACGTCGGCGTCGAGGTCGACDesign primers
3672793GCCGCCGCCGACGCCGTCGCCGCGDesign primers
3682589GGCGGCGGAGGCGGCGGAGGCGCCDesign primers
3683273AGTGCGGGAGCCGGAGCAGGCGCGGGAGCCGGAGCAGGCGCGGGAGCCGGAGCGDesign primers
3707275CCGACGAGCCGGACGAGCCCGACGAGADesign primers
3741017GATCTGACCGACCTGACCGATCTGGCCDesign primers
3751397CGGTCTCGGTGTCGGTTTCGGTGTDesign primers
3864554CCGGCGCGCCGCCGCGGCGGCGCGDesign primers
3885518CTCACTCAGTCACTCACTCACTTADesign primers
3952931CGCCGCGGCGCACCGCGGTGTGCGGCGGCGDesign primers
4109247GCGCGG-GCGCGG-GAGCGG-GCGCCGDesign primers
4127474GTCGGCGTCTGCGTCGGCGTAGGCDesign primers
4296466GACATCGCCGAGATCGCCGACCTCGCCDesign primers
4310575GGCCTTGGGCTTGGCCTTGGCCTTDesign primers
4310980CGCGAACAGCCCGAACAGCGCGAGCAGDesign primers
4342668TTGTCCCAGTCGTTGTCCCGTTCGTTGTCCCAGTGGTTGTCCCGGTCGDesign primers
4357346CGCGGTGCTCGCGGTCGCGGTGCTCGCCGGCGTGGTGACCGCGGTDesign primers
4369110CCCGAGCCTGAGCCCGAACCCGAGCCCCAGDesign primers
4369467GCCGAGCCGAAGCCCGAGCCGAAACCCGAGCCCAAGGCCGAGCCGAAGDesign primers
4369516CCGAACCCAAGCCGGAACCCAAGCCCGAGCCCAAGGCCGAACCCAAGCCGGAACCGAAGCCCGAACCCAAGCDesign primers
4369794GCCGCGGCGGCGCCCGCGGCCCCGDesign primers
4377886CTACTACGACGTGTAAGTCGGCTCGCCGACGCGACGTGTAAGTCGGCTCGCCGACGCGACGTGTAAGTCGGCTCGDesign primers
4378996CTAGAAACTCAGCCGCTACATCCAC-TTGGCGGCTCAGCCGCTACATCCAC-TTGGCGGCTCAGCCGCTACATCCAC-TTGGCGGCTCAGCCGCTACATCCACDesign primers
4432066CACCGCGAGCACCGCGCGGTGCACCGCGAGCTCCGCGCGTTGCACCGTGAGCTCCGCGAGTTGCACCGTGAGCTCCGCGAGTTGDesign primers
4432278CGCGGTGC-CTTGGTGC-CTTGGTGC-CTTGCTGC-CTTGGTGC-CTTGCTGC-CTTGGTGC-CTTGGTGCDesign primers
4437675GGCGCCTCGGTTGTCGTGGGTGCCTCAGTGGTCGTGGGCGCCTCGGTCGTCGGGDesign primers
4466044GAACGCGAATGCAAACGCAAACGCDesign primers
4500827GTGGTCGTGGTGGTTGTGATGGTCGTGDesign primers
4537936CGTCGA-CGGCGA-CGCCGA-CGCCGA-CGCCGADesign primers
4545640ACCACGGCCACGATCACGAACACGDesign primers
4557328GCCGCCGTCGCCGCCGGCGCCGCTDesign primers
4586900CG-TC-TC-GC-TC-AC-TC-TC-TC-GC-TC-AC-CG-TC-TC-GC-TC-ACDesign primers
4692837CGCGTCGCATAGCGTCGAGTCACGTDesign primers
4711669TTCGTCGGA-GTCGTCGGA-GTCGTCGGADesign primers
4711947TCTCGTGGT-CCTCGTGGT-CCTCGTGGTDesign primers
4713997GTC-GTC-GTC-CTC-GTC-CTC-GTC-GTCDesign primers
4714209CCTCGGTTTCGGCCTCGGCTTCGGCCTCGGCTGCGGDesign primers
4714251CGGGTTCGGCAGGTTCGGCAGGTTCGGDesign primers
4834873GCTTGCTTG-TCTTGCTTG-TCTTGCTTGDesign primers
4835272GACTCAGAGGATTCAGAGGGCTCAGAGDesign primers
4873957GGTGCGTGTGCGGGCGCGGGTTCGDesign primers
4874616GCTTCGGTGTCCTCGGCGGCTTCGGTGTCTTCGGTGTCTTCGGCGTTCTCGGCGDesign primers
5015703TCGAAGAGC-TCGAAGAGC-TCGATGAGCDesign primers
5041483CGCGATCGCGAGTGCGATCGCGGTDesign primers
5104065CAGGTCCAGGTTGAGGTCCAGGTCDesign primers
5114378TGTGGCCGTCTTGGTGACCGTCTTGGTGGCCGTCTTDesign primers
5138510CGGTCGCCGCGGTCGTCGCGGTCGCGGDesign primers
5140549GTCGGTTGAGGTGGGCTGAGGTGGGCTGAGDesign primers
5209736CGGTGTCGGTGGCGGTTTCGGTGGCGGTGGDesign primers
5209789TCGACGGGCTCGGCGGGCTCGGCGGGCDesign primers
5214310CAC-CAC-CGC-CAC-CGC-CAC-CAC-CACDesign primers
5226477CTTCTTTGCACCGCGA-GCACTTTGCACCGCGA-GCACTTTGCACCGCGADesign primers
5227316CGCACGCTCGCGGTGCCGGGTGCGCTCGCGGTGCCGGGTGCGCTCGCGGTGCCGDesign primers
5261544GCGCTGGCGTTGGCGCTGGTGCTGDesign primers
5307179AGCACCGCGAGCACCACGACCACCGCGDesign primers
5321760GTCCTCGAAGTCCTCGGAGCCCTCGAADesign primers
5328109CCGACGTCGACGCCGACGCCGCCGDesign primers
5344420CGAGGTCCAGGCCGAGGTTCCGGCCGAGGTTCAGGCCGAGGTTCCGGCDesign primers
5349155CGGGCTCCTCAGGGCTCCTCGGTGCTCCTCDesign primers
5435676TCGGTGTCTGTGTCGGTATCCGTGTCGGTGDesign primers
5435784TTCTTGGTGTCGTTCGTGGTGACGCCCTTGGTGTCGDesign primers
5439790CGTTCACCTCGGGGAAGTTCACCTCAGGCAGGTTCACATCCGGGADesign primers
5439904CCGGGACGTTCACATCCGGCACGTTCACGC-CGGGCACATTCACATCCGGCACGTTCACGC-CGGGCACATTCACATCCGGCACGTTCACGC-CGGGCACATTCACATCCGGCACGTTCACGC-CGGGCACATTCACATDesign primers
5461929ACGGAGGCCACGGCGGCCACGGAGGTCDesign primers
5462426GAT-GGC-GGC-GAC-GGC-GGC-GAC-GGC-GGCDesign primers
5462551CGGCAGCGGCGGCACCGGCGGCAGCGGDesign primers
5463321GCGGCAACGGCGGAAACGGGGGCAACGDesign primers
5463385CGGCGGCGCCGGCGGTGGCGGCGGDesign primers
5517032CGCACCTTTCGCACCGTTCGCACCTTTDesign primers
5552448TCATCGGCCTCGTCGCCGGCCTCGTCGCCGGCCTCGDesign primers
5552528CTCGACCTCCTCGACCACCTCGACGTCCTCGATCTCDesign primers
5558158GCCGTCGCCCGCAGACGCCCGACGTCGCGCDesign primers
5606818CGGGTT-CGGGTT-CGGGCT-CGGGTGDesign primers
5608380TGCTGACCGGGCTGCTGGCCAGGCTGCTGACCAGGCDesign primers
5644160ACGAGGAACTTCAGTCCACCAACGAAGAGCTTGAGACCACCAACGAGGAACTTCAGTCGACGGDesign primers
5644225GAGGAACTGGAGACCACCAACGAGGAACTCCAGTCCACCAACGAAGAACTCGAGACCATGAACGAGGAGTTGCAGTCCACCAACGACGAACTGCACACCATCAACDesign primers
5668685TCGGTCTCGGTGCCGGTCCCGGTCDesign primers
5671427CGACTCCGATTCCGAGTCCGATTCDesign primers
5673698ACTCAG-GTTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTGDesign primers
5729220CCGTCGTCGTCGCGGTCGCCGTAGDesign primers
5785109GCTTCGCGTCGCTGCGCATCGCGTCDesign primers
5787681CCTGCCTCCCGCCCCTGAGGCCCTGCCTCCGGCCCCGGAAGCCCTTCCGCCGGCCCCAGAGGCDesign primers
5787749CCCCGGCTCCTGAGGCCCTGCCGCCCGCACCCGAGGCCCTGCCCCCGGCACCTGAAGCCCTCCDesign primers
5836526GCGCTC-GGGCTC-GGGCTC-GGGCTCDesign primers
5853304GGTGACGC-CGTGACGC-CGTGACGCDesign primers
5860639GTTGTTGCTGTTGTTGTTGTTGCTDesign primers
5876511GAT-CGC-CGG-CGC-CGC-GAC-CGC-CGT-CGC-GGC-GAT-CGT-CGG-CGG-CGTDesign primers
5890603CACCACCAGCACCACCACGACCACDesign primers
5900030CGCTGACCCCCTGACCCCCTGACCDesign primers
5977972TGG-CGG-CGG-CGG-TGG-TGG-CGG-CGGDesign primers
5978071CGG-CGG-CGG-TGG-CGG-CGG-CGG-TGGDesign primers
5989306CCTGGAGGC-CCTGGAGGC-CCGGGAGGCDesign primers
6102099CCTTGGCCTTCTTGGCCTCCTTGGCCGDesign primers
6129974CGGGCACTGACA-AGGGCACTGACA-AGGGCACTGGCADesign primers
6147083GTCGGCGTGGGCGTGGGCGGCGGCDesign primers
6164122GCCGGTTGGGGTGCGGGCTGGGGTGCCGGTTGTGGTDesign primers
6186421TGTCGAGGTCGATGTCGGTGGCGADesign primers
6227970AGGCCTTCTTGGCGGCGGCTTTCTTGGCGGGTGCCTTCTTGGCAGDesign primers
6271430ACC-GCC-TCC-GCC-GCC-GCC-ACC-GCCDesign primers
6274329CCG-CCG-ACG-CCG-CCG-CCG-CCG-CCGDesign primers
6274470CCGGGTCCCGGTCCCGGTCCGGGCDesign primers
6333673AACCAC-GACCAC-GACCAC-GACCACDesign primers
6345016GCGCCTCGCCGCGCCGCGGCGCGTCDesign primers
6365997CGAGGCCGACGCCGTGGCCAAGGCDesign primers
6391870GCGCCGCGACGCGGCGGGCCCCGCCDesign primers
6422884GGCGAGGGTGAGGGCGAGGGCAAGDesign primers
6478218ACTGACCTCCCCCGGTCTGGCCTCCCCTGGTTTGACCTCCCCGGGDesign primers
6478318CTGACCAACCCGGCCCTGACCAATCCGGCGCTGACCAGCCCCGACDesign primers
6480295CCGAGGCCGCGGCCGAGGGCGAGGDesign primers
6480625GAGCCGAAA-AGCCCGAAA-AGCCCGAAA-AGCCCGAAA-AGCCCGAAA-AGCCCGAAADesign primers
6488469TCGGGCTCGTCGTCGAGCTCGTCGTCGGGATCCTCGDesign primers
6488506GGTCGTCCGGGTCCTCCGGGTCGGCCGDesign primers
6488655GCTCCC-GCTCCC-GCACCC-GCACCC-GCACCC-GCACCCDesign primers
6491960CGAGCACCGCGAGCACAGCGAGCACCGDesign primers
6492983CCGCCACCGGGCCGGTCACCGGGCCAGTCACCGGGCDesign primers
6502790GGTCGGCTTGGTGGGCTTGGTGGGCTTDesign primers
6506412GCCAAGAAGGCACCGGCCAAGAAATCGCCGGCCGAGAAAGCGCCGGCCAAGAAGGCACCGGCGAAGAAGGCCCCGDesign primers
6506499AAGAAAGCACCCGCCAAGAAGGCACCGGCGAAAAAGGCACCGGCCDesign primers
6507210GCGAGGGCGAGCGCGATGTCGAGGDesign primers
6555828GGTGCCGGTGGTCCCGGTGGTCCCGGTDesign primers
6561405TCGTCGACTGAACTGGTCGACTGAACTGGCCGACTGAACDesign primers
6567918CCGTGCCCACCCTGCCCACCGGGCCCADesign primers
6617536GTCGTAGCCGTACTCGTAGGCGTADesign primers
6691381GCGATTCGGGCCGATACGGGGCGATCCGAGDesign primers
6726158TGGCGCTCGCGCGGGCGCTGGCACDesign primers
6739555CCGCGGTCGCGGCCGCCGCCGAGGDesign primers
6772454GCCCAGGCCAGCCCGTCCCAGCCCGDesign primers
6832524GGAGTCGGTGGACTCGGTGGAGTCGGCDesign primers
6987368TCGCCGTCA-TCGCCGTCA-TCGCCGGCADesign primers

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