Microsatellites /Tandem Repeats database

Genome: Burkholderia cepacia GG4

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
127905TCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGADesign primers
130620GTGCACCT-CAGCACCT-CAGCACCT-CAGCACCT-CAGCACCT-CAGCACCT-CAGCACCT-CAGCACCT-CAGCACCT-CAGCACCT-CAGCACCT-CAGCACCTDesign primers
130717AGCACCCC-AGCACCCC-AGCACCCC-AGCACCCC-AGCACCCC-AGCACCCC-AGCACCCC-AGCACCCCDesign primers
171905AAACGGAGCC-CAACGGAGCC-CAACGGAGCCDesign primers
503012GTTCTC-GTTCTC-GTTCTC-GTTCTC-GTTCTCDesign primers
522394GGGAAGC-GGGAAGC-GGGAAGC-GGGAAGCDesign primers
522423GAAAGCG-GAAAGCG-GAAAGCG-GAAAGCGDesign primers
522452GAAGCGG-AAAGCGG-AAAGCGG-AAAGCGG-AAAGCGG-AAAGCGGDesign primers
563978AAAGGCCAGC-AAGGACCAGC-AAGGACCAGC-AAGGACCAGC-AAGGACCAGC-AAGGACCAGC-AAGGACCAGC-AAGGACCAGCDesign primers
599403TCGCCGGCCGATGCC-GCGCCGGCCGATGCC-GCGCCGGCCGATGCCDesign primers
766724GCCGGCGAACTGAGACCGGCGAACTGAGGCCGGCGAACCGAGDesign primers
801469GCCAGT-GCCAGT-GCCGGT-GCCGGT-GCCAGT-GCCAGT-GCCAGT-GCCAGT-GCCAGT-GCCAGT-GCCAGT-GCCAGT-GCCAGT-GCCAGT-GCCAGT-GCCAGTDesign primers
826286GCGCGTA-TCGCGTA-TCGCGTA-TCGCGTA-TCGCGTA-TCGCGTA-TCGCGTA-TCGCGTADesign primers
848812GCC-GCC-GCC-ACC-GCC-GCC-GCC-GCC-GCC-GCC-GCC-GCC-GCC-GCC-GCC-GCCDesign primers
964130GCGCGACG-GCGCGACG-GCGCGACGDesign primers
964169GGTGCGAT-GGTGCGAT-GGTGCGATDesign primers
991564CCGCTACCG-CCGCTACCA-CCGCTACCA-CCGCTACCA-CCGCTACCA-CCGCTACCA-CCGCTACCA-CCGCTACCADesign primers
992272CCGCCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCA-CCACCACCGGAAGCADesign primers
992497CTCGTACCGCCC-GTCGTACCGCCC-GTCGTACCGCCC-GTCGTACCGCCCDesign primers
997527TGCCGAAGCAGCTGCCGGAGCAGCAGCCGAAGCAGCDesign primers
1043614TGACTT-CGACTT-CGACTT-CGACTT-CGACTT-CGACTTDesign primers
1125116TCTGCCATTGCC-GTTGCCATTGCC-GTTGCCATTGCC-GTTGCCATTGCC-GCTGCCATTGCC-GCTGCCATTGCCDesign primers
1303912GGTGCTGA-GGTGCTGA-GGTGCTGA-GGTGCTGADesign primers
1375860AGTAACGAAGCAGTAACGACGCAGTAACGAAGADesign primers
1407128CCGGTTGCCGCAGCACCGGCTGCCGCAGCACCGGCTGCCGCAGCADesign primers
1573593TCAGCGGA-TCAGCGGA-TCAGCGGADesign primers
1916082GCCGCCGCACTGGCCGCTGCACTGGCCGCCGCACCGDesign primers
2285804GACGCC-GAAGCC-GAAGCC-GAAGCC-GAAGCC-GAAGCC-GAAGCC-GAAGCCDesign primers
2397748TGCCTGCTTCGGCTTCGGTGCCGGCTTCGGCTTCGGTGGCTGCTTCGGCTTCGGTGGCTGCTTCGGCTTCGGTGGCTGCTTCGGCTTCGGTGCCTGCCTCGGCTTCGGDesign primers
2398301GCGTCAC-GGGTCAC-GGGTCAC-GGGTCAC-GGGTCAC-GGGTCAC-GGGTCAC-GGGTCACDesign primers
2527102GGCTCGCCG-GGCTCGCCG-GGCTCGCCGDesign primers
2644958CGCGAAGGC-CGCGAAGGC-CGCGAAGGCDesign primers
2833302CGGCGCAAT-CGGCGCAAT-CGGCGCAATDesign primers
2924915GCGTCG-GCGTCG-GCGTCG-GCGTCGDesign primers
2937462GCCGCTCAA-GCCGCTCAG-GCCGCTCAG-GCCGCTCAG-GCCGCTCAG-GCCGCTCAGDesign primers
3055169GGTTG-GGTTG-TGTTG-GGTTG-GGTTG-GGTTGDesign primers
3099344TGGTGATCTGCTGTTGATCTGCTGTTGATCTGCDesign primers
3099378ATTGATCTGCT-GTTGATCTGCT-GTTGATCTGCT-GTTGATCTGCTDesign primers
3099423TTGATATGCTGTTGATCTGCTGTTGATCTGCTGDesign primers
3099457TGATCTGCCGT-TGATCTGCCGT-TGATCTGCCGT-TGATCTGCCGT-TGATCTGCCGTDesign primers
3197399GCCTTCTTCGGAGCAGCAGCCTTCTTGGGAGCAGCAGCCTTCTTCGGAGCAGCADesign primers
3197557CGCGGGCGCAGCCTTCTTCGCAGCAGGCGCAGCCTTCTTCGCAGCGGGCGCAGCCTTCTTCGCDesign primers

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