Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Burkholderia cepacia GG4

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
30570	GGCGCGACGCGGCTCAGCGCGGTGC	Design primers
76105	GACAGGCATCCGGCGACGGGCATCCGGCGACGGGCGTCCGGC	Design primers
120056	GCGTCGACGCATCGACGCGTCGAT	Design primers
127824	CGGCCA-CGCGCA-CGGCGA-CGGGCA-CGGGCA-CGGGCA	Design primers
127902	TGGTCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA	Design primers
130617	GCCGTGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA-CCTCAGCA	Design primers
130714	CTCAGCAC-CCCAGCAC-CCCAGCAC-CCCAGCAC-CCCAGCAC-CCCAGCAC-CCCAGCAC-CCCAGCAC-CCCAGCAC	Design primers
160507	CAGGTCAAGGCGCTGACGACGGCGCAGGCCGCGGCGTTGACGACGGCGCAGGTCGCCGCGCTGACGACGGCG	Design primers
161823	GGCGCTGACCACGGCGCAAGCCGCGGCGCTGACCACGGCTGACGTCGCGGCGCTGACGACCGCGCAGGCGGC	Design primers
171904	AAAACGGAGC-CCAACGGAGC-CCAACGGAGC	Design primers
227924	GCCGGCGCCCGCGGCGGCGCCGGA	Design primers
315062	GCCGCGCAGCGCGGCGCCGCGCTGC	Design primers
321451	CGGGAAAAGCGCCGGGAACACCGCCGGGAAATGCGC	Design primers
330847	CGCGAGCGCGCGCGCCAGCGCGAT	Design primers
343907	GCGGTGCGGCGCCGTGCGCTGCTGT	Design primers
398637	TCGTGGTCATGGTCGTGATCGTGG	Design primers
418988	GCGGCGGCGGCGGCAGCGGTGGCG	Design primers
422025	GGG-CGG-CGG-CGG-GGG-CGG-CGG-CGG	Design primers
462412	ATCAGCGCATTAGCGCATCAGTGC	Design primers
503011	TGTTCT-CGTTCT-CGTTCT-CGTTCT-CGTTCT	Design primers
514462	CGGCGC-CAGCGC-CAGCGC-CAGCGC	Design primers
522390	GAGGGGG-AAGCGGG-AAGCGGG-AAGCGGG-AAGCGGA-AAGCGGA-AAGCGGA-AAGCGGA-AAGCGGG	Design primers
522454	AGCGGAA-AGCGGAA-AGCGGAA-AGCGGAA-AGCGGAA-AGCGGAA	Design primers
556497	AGCGGCAGCGGAAGCCGCAACGGC	Design primers
563973	GCAGGAAAGG-CCAGCAAGGA-CCAGCAAGGA-CCAGCAAGGA-CCAGCAAGGA-CCAGCAAGGA-CCAGCAAGGA-CCAGCAAGGA	Design primers
577225	GCGGCGGGCACCCGACGGCGGGCACCCGGTGGCGGGCATCCG	Design primers
594140	GCGCGAGCGCGGGCGTGAGCGCGT	Design primers
598148	GCCCGGCGCCCCCAGCTAGGCGCCCCCAGCTAGGCGCCCCCA	Design primers
599401	AATCGCCGGCCGATG-CCGCGCCGGCCGATG-CCGCGCCGGCCGATG	Design primers
641169	GAGAACAGCGAAGAGCGTAGAACAGCGAAGAGCAGAGAGCAGCGAAGAACGGAGAACGGAGAAGAGCGAGGAACGGCGAAGAGCG	Design primers
676608	CGGGTGTTCGGGCGTTCGGGCGTT	Design primers
766720	TGATGCCGGCGAACTGAGACCGGCGAACTGAGGCCGGCGAAC	Design primers
767782	CGCGGTCGAGCGCGCGGTTCAGCGCGCGGGCGAGCT	Design primers
770338	CCGATTGAACGATTGACCGATTGA	Design primers
801465	CATCGC-CAGTGC-CAGTGC-CGGTGC-CGGTGC-CAGTGC-CAGTGC-CAGTGC-CAGTGC-CAGTGC-CAGTGC-CAGTGC-CAGTGC-CAGTGC-CAGTGC-CAGTGC	Design primers
820933	GGCAGC-GGCAGC-GACAGC-CGCAGC	Design primers
826282	AGATGCG-CGTATCG-CGTATCG-CGTATCG-CGTATCG-CGTATCG-CGTATCG-CGTATCG-CGTATCG	Design primers
848810	TTG-CCG-CCG-CCA-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG	Design primers
918148	CGCCGCGACGCGCGGCGCCGCGCTG	Design primers
950055	GCGGCGCC-GCGGCGCC-GCGGCACC	Design primers
958237	GTCGCCGTCGTCGTCGCTGTCGTC	Design primers
964113	CGCGCGAC-TGCGCGAC-TGCGCGAC-GGCGCGAC-GGCGCGAC	Design primers
964154	GTGCGACG-GTGCGACG-GTGCGATG-GTGCGATG-GTGCGATG	Design primers
979085	CGAGCGCGACGAACGCGACGAGCGCGG	Design primers
991556	CGCTGCCGCCGCTACCGCCGCTACCACCGCTACCACCGCTACCACCGCTACCACCGCTACCACCGCTACCAC	Design primers
991671	ACTGCCGCTGCCATTGCCATTGCC	Design primers
992270	GGCCGCCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG-CACCACCACCGGAAG	Design primers
992493	GCCGCTCGTACC-GCCCGTCGTACC-GCCCGTCGTACC-GCCCGTCGTACC-GCCCGTCGTACC	Design primers
997525	GGTGCCGAAGCAGCTGCCGGAGCAGCAGCCGAAGCA	Design primers
1034522	AGGCCGTCCGCCACTGGCCGTCCGCGACCGGCCGTCCGCAAC	Design primers
1043613	CTGACT-TCGACT-TCGACT-TCGACT-TCGACT-TCGACT	Design primers
1120715	CGCGAGCGCGCGCGCGATCGCGAC	Design primers
1125113	CCGTCTGCCATT-GCCGTTGCCATT-GCCGTTGCCATT-GCCGTTGCCATT-GCCGCTGCCATT-GCCGCTGCCATT	Design primers
1125186	CCGCTG-CCGCTG-CCGCTG-CCGCCG-CCGCCG	Design primers
1138389	CGCCGCGATCGCCGCGGTCGCCACGAT	Design primers
1144666	GCGCAGGCGCGCACGCGCGCGGGC	Design primers
1163508	TTGCCGCGTCAGTCCCGCGTCAGTCCCGCGTCA	Design primers
1186886	TGCCGGTGTCGGTGCGGGTGTCGG	Design primers
1187183	CGCCGCAGCCGCCGTCGCTGCCGC	Design primers
1192305	GCGGC-GCCGC-GCGGC-GCGCC-GCGGC	Design primers
1193604	AGAGCGCGGCGGCGAGCGCGGTGGTGAACGCGGCGG	Design primers
1202336	GGCGCTGCGCGGCTCCGCGCGGCAC	Design primers
1210940	GGCGGCGGAGGCGGCGGCGTCGGC	Design primers
1231028	CGGCGTCGACGTCGTCGTCGGCAT	Design primers
1240149	GCCGGATTCGGCCGGGTTCGGCCGGACGCG	Design primers
1290360	GTGCCGGACTGGCCCGGACTGGCCCGGACT	Design primers
1303909	TGGGGTGC-TGAGGTGC-TGAGGTGC-TGAGGTGC	Design primers
1319001	GCGCGGCCGGCGAGGTGCGGCCGGCTAGGCGCGGCTGGCTAG	Design primers
1375857	CGAAGTAACGAAGCAGTAACGACGCAGTAACGA	Design primers
1395874	GGCGGCCGGCTGCGCCCGGCGGCGGCCGAA	Design primers
1407123	CGGCGCCGGTTGCCGCAGCACCGGCTGCCGCAGCACCGGCTGCCG	Design primers
1407512	GCACCCGCGCAGGCTGCACCGGCTCCGGCTGCCGCCGCGCCGGCT	Design primers
1408382	CTGACGCTGCCGCTGTCGCTGTCG	Design primers
1409070	GCTCCGGCCGCCGCGCCCGCCGCCGCCCCGGCCGCC	Design primers
1423986	CGGCAGCTGCCTTCTCAGCCGCTGCCTTCTCAGCCGCCGCCTTCTCGGCAGCAGCGTTCT	Design primers
1455200	CGA-CGA-GGA-CGA-GGA-CGA-AGA-CGA-AGA-CGA	Design primers
1495955	CCGGCGCCCGTGTACGCACCGGCGCCTGTTTATGCACCGGCACCCGTCTACGCG	Design primers
1496109	GCGATCACGATCGCGATCGCGGTC	Design primers
1537798	CAGCAGCTCCAGCAGCTTCAGCAGCGC	Design primers
1573592	TTCAGCGG-ATCAGCGG-ATCAGCGG	Design primers
1573657	GCCGCGCGCGCCCGCGCGGGGCGGCGCACG	Design primers
1600821	GTTGTTGCGGATACGGTTGCGGCGGGTACGGTTGCTGCTGATACG	Design primers
1665328	CGCCGCGCGGCACCGCGGCGAGCCG	Design primers
1736697	GTCGAGGTCGCGGTCGAGGTCGGG	Design primers
1749088	CGGCCGGCGGGAGCCGGCGGCGCCCGCCGG	Design primers
1779981	GTGCAGATGCAGGAGCAGATGCAG	Design primers
1820398	GGCGGCGGCCGCGGCGCCGTCGGC	Design primers
1833469	GGCTGCGGTTGCGGCTGGGTCTGC	Design primers
1916079	CTTGCCGCCGCACTGGCCGCTGCACTGGCCGCCGCA	Design primers
1943059	TGACGACCGCCGGGACGAGCGCCGTGAGGACCACCGTGACGAGCGCCG	Design primers
2076938	CGGGCAGCACCAGCGGCTCGACCAGCGGCAGCACGAGCGGCTCGACGAGTGGCAGCACCAGCGGCTCGACGA	Design primers
2157158	GCGATCACGATCGCGAGCACGATC	Design primers
2171213	CGCGAACGCAAACGCGACCGCGCA	Design primers
2172320	CTGCCCCAGCGAAGGCTGCCGCAGCGTCGGCTGCCGCAGCAACGG	Design primers
2229289	GCAGCAGGCGCAGCCGGCCCAGCAGGC	Design primers
2285801	CCTGAC-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA	Design primers
2299602	CGCCGCGCGCGCCACGCGCGCCACGCG	Design primers
2349991	CACGAGCAACACGAGCGACACGAGAAA	Design primers
2397596	GCCGGTGCCGCTGTCGGTGCCGGG	Design primers
2397710	CGTGCCGGCTTCGGCTTCGATGCCTGCTTCGGCTTCGATGCCTGCTTCGGCTTCGGTGCCGGCTTCGGCTTCGGTGGCTGCTTCGGCTTCGGTGGCTGCTTCGGCTTCGGTGGCTGCTTCGGCTTCGGTGCCTGCCTCGGCTTC	Design primers
2398296	GCCCGGC-GTCACGG-GTCACGG-GTCACGG-GTCACGG-GTCACGG-GTCACGG-GTCACGG-GTCACGG	Design primers
2404657	GGCGCCGCACGCCGCCGCGCGGCGTCGCGC	Design primers
2469831	GCGCCGTCGCCGGCGCCCGCTCCG	Design primers
2472683	GATCGCGGCCGATAGCGGTCGCTCGCGGCC	Design primers
2478065	CATCGCGTCTTTCTTCATCGCGTCCTTCTTCATCGCATGCTTCTTCATGCCGTCCTTCTTCATCGCGCCGTCCTT	Design primers
2502105	TC-GC-GC-TC-GC-CC-GC-GC-GC-TC-GC-GC	Design primers
2510925	GCCGCCGGCGCGGCGGCCGCCGCGGCAGCCGGCTCG	Design primers
2527100	CCGGCTCGCCGGGCTCGCCGGGCTCGC	Design primers
2556430	GCCGGGCG-ACCGGGCG-ACCGGGCG	Design primers
2556719	GCTTCGGCATGCTTGCCGTCCGCATGCTTGCCGTCCGCATGCTTG	Design primers
2585488	CGC-CGC-CGG-CAC-CGC-CGG-CGC-CGC-CGC	Design primers
2609314	TGAACATGCCGAACATGCTGAACATGC	Design primers
2644629	CGCCGGCTCCGGCGCCCGCGCCGG	Design primers
2644850	CGTGAACCCCGCGAGGGTCGTGAACCGCGTGAGGGTCGCGAACTGCGCGAGGGT	Design primers
2644957	GCGCGAAGG-CCGCGAAGG-CCGCGAAGG	Design primers
2645021	CG-CG-AG-CC-GC-GC-GA-AA-GC-CG-TG-AG-CC-GC-GC-GA-GA-AC-CG-CG-AA-CC-GC-GC-GA-GC-GC	Design primers
2668048	ACGAACATCACCAACATCACCAACATC	Design primers
2671984	GGATCGAATCGGATCGAATCGGGTC	Design primers
2732483	GCGCCTGCGTCTGCTCCTGCGCCG	Design primers
2740205	TCGCGATTGCGATCGCGATCGCAA	Design primers
2790493	CCGCGCCGCTGCGCGCCGCCCCACG	Design primers
2833301	CCGGCGCAA-TCGGCGCAA-TCGGCGCAA	Design primers
2856466	CAAGAT-CACGAT-CACGAT-CACGAT	Design primers
2913712	TC-GC-GC-TG-GC-GC-GC-GC-GC-TC-GC-GC	Design primers
2924914	TGCGTC-GGCGTC-GGCGTC-GGCGTC	Design primers
2937449	TCGGGCCGC-TCAAGCCGC-TCAAGCCGC-TCAGGCCGC-TCAGGCCGC-TCAGGCCGC-TCAGGCCGC-TCAGGCCGC	Design primers
2951085	GCG-GCC-GCG-ACC-GCC-GCC-GCT-GCC	Design primers
2966410	CGCGCGTGTTCCGCGCGTTTCCCGCGCGTCATC	Design primers
3028959	CGAGCAGCACGCCGCGCATCACGCCCGGCAGCACGC	Design primers
3055168	CGGTT-GGGTT-GTGTT-GGGTT-GGGTT-GGGTT	Design primers
3072025	CGGCGCGACGCGGCGCGGCACTGCGCGGCT	Design primers
3099340	CCGGTGGTGAT-CTGCTGTTGAT-CTGCTGTTGAT-CTGCTATTGAT-CTGCTGTTGAT-CTGCTGTTGAT-CTGCTGTTGAT-CTGCTGTTGAT-ATGCTGTTGAT-CTGCTGTTGAT-CTGCTGTTGAT-CTGCCGTTGAT	Design primers
3099473	TGCCGTTGATC-TGCCGTTGATC-TGCCGTTGATC-TGCCGTTGCCC	Design primers
3107376	CGCCGCCGCGCAGCCGCGCCACCG	Design primers
3150372	GACGCGCGCACGCGCGGCCGCGCG	Design primers
3156194	CGTCGGTGCTGCCGGCGCTGCTGCCGGCCGTGCTGC	Design primers
3197396	ACGGCCTTCTTCGGAGCAGCAGCCTTCTTGGGAGCAGCAGCCTTCTTCGGAGCA	Design primers
3197551	CTTCTTCGCGGGCGCAGCCTTCTTCGCAGCAGGCGCAGCCTTCTTCGCAGCGGGCGCAGCCTT	Design primers
3197676	CCTTCTTCGCAGCAACCTTCTTCACTGCGACCTTCTTGGCTGCAACCTTCTTCGCAGCGG	Design primers
3197754	CCTTCTTCGCAGCAACCTTCTTCACCGCGACCTTCTTGGCTGCAACCTTCTTCGCAGCGA	Design primers
3197880	CCTTCTTCGCGGCAACCTTCTTCACCGCGACCTTCTTCGCAGCAACCTTCTTCACTGCAG	Design primers
3197957	GCAGCAGCCTTCTTGGCAACGGTCTTCTTGGCAGCAACCTTCTTA	Design primers
3204316	GCGCCTGCGCGTGCTCCTGGGCCT	Design primers
3225656	CGCGGCCGCGGTGGCGGCCGCGAC	Design primers
3384169	CG-AG-CG-CG-AT-CG-CG-CG-CG-CG-AG-CG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

30570

GGCGCGACGCGGCTCAGCGCGGTGC