Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes SLCC2372

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
89605AAACAGCAAAAGAAACGGAAAAAGAAACAACAAAAGDesign primers
159141CACATTAGTACCACCAACACCAGTACCACCAACACCAGTACCACCDesign primers
191556TCATCATCGTCATCAGCATCATCADesign primers
588274AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
618116GTTTGT-ATTTGT-ATTTGT-ATTTGT-ATTTGT-ATTTGTDesign primers
709016TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
789425AA-AA-AA-TA-AA-AA-AA-GA-AA-TA-AA-TA-ADesign primers
880275AAATTGTAA-AACCTATAA-AACCTATAA-AACCTATAA-AACCTATAA-AACCTATAADesign primers
955260AGAACAAAAACAACAACAAGAAAADesign primers
987619AAAAAGAAGAAGAAAACGAAACAGDesign primers
1058443ATAAA-ATAAA-CTAAA-ATAAA-ATATADesign primers
1148619ACTCCAGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCAGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1148692ATCCGGTAG-ATCCAGTAG-ATCCGGTAG-ATCCGGTAA-ACCCGGTAG-ATCCGGTAG-ATCCGGTAG-ATCCAGTAG-ATCCGGTAGDesign primers
1252175CAAATTTAAGATTTGCAAATTTAAGACTTGCAGATTTAAGAGGTGCAAATTTAAGTTATGDesign primers
1252236AGATTTAAATGGTGC-AGATTTAAATGGTGC-AGATTTAAGAGGTGCDesign primers
1252290TTATGCAGATTTAAGTTATGCAGATTTAAATGGTGCAAATTTAAGTTATGCAAATTTAAADesign primers
1335583ATCCAGACCCAA-CACCAGACCCAA-CACCAGACCCAADesign primers
1661211ATTAGCAATAGCATTATCATTATCDesign primers
1666363GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1890176TCCGCATCAGCGTCAGCATCCGCGTCAGCATCGGCGDesign primers
1890213CAGCATCGGCATCCGCATCAGCGTDesign primers
1890631ATCCGC-ATCCGC-ATCGGC-ATCCGC-GTCAGC-ATCCGCDesign primers
1890689GCATCCGCATCCGCATCAGCATCCGCGTCGGCATCCDesign primers
1890726CATCAGCGTCGGCATCCGCGTCAGCATCAGCGTCGGDesign primers
1890763ATCCGC-ATCAGC-GTCGGC-ATCCGC-GTCAGC-ATCCGC-ATCAGC-ATCAGC-ATCCGCDesign primers
1890818TCAGCA-TCCGCA-TCCGCA-TCAGCA-TCAGCG-TCGGCA-TCCGCA-TCCGCA-TCAGCADesign primers
1890873CCGCGTCGGCAT-CCGCGTCAGCAT-CCGCATCAGCAT-CCGCATCCGCAT-CCGCATCAGCATDesign primers
1890934AGCATC-CGCATC-CGCATC-CGCATC-AGCATC-CGCATC-AGCATC-AGCATC-AGCATC-AGCATC-CGCATC-CGCATC-AGCATC-AGCATC-AGCATC-AGCATC-CGCATCDesign primers
1891037GCGTCA-GCATCC-GCATCC-GCATCA-GCATCC-GCATCA-GCATCA-GCATCA-GCATCC-GCATCA-GCATCA-GCATCADesign primers
1891110CATCCG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCCG-CATCAG-CATCGG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCAG-CATCCG-CATCAG-CATCCGDesign primers
1891274TCGGCATCAGCATCCGCGTCAGCATCAGCGTCAGCATCAGCGTCAGCATCAGCATCGGCATCCGCATCCGCADesign primers
1891347CAGCATCCGCGTCGGCATCCGCGTCAGCATCGGCGTCAGCATCCGCATDesign primers
1891415GCGTCG-GCATCC-GCATCC-GCATCA-GCATCG-GCATCC-GCATCG-GCATCC-GCATCC-GCATCA-GCATCA-GCATCC-GCATCC-GCATCA-GCATCCDesign primers
1891506CATCCGCGTCGGCATCCGCATCCGCGTCGGCATCAGCATCCGCGTCGGCATCAGCATCCGCGTCGGCATCAGDesign primers
1891579ATCGGCATCCGCGTCGGCATCAGCGTCGGCATCCGCATCCGCDesign primers
1891622TCAGCA-TCCGCG-TCAGCA-TCAGCG-TCAGCA-TCCGCG-TCAGCA-TCAGCA-TCGGCA-TCCGCA-TCAGCA-TCAGCADesign primers
1891695CCGCGTCGGCATCAGCGTCGGCATCCGCGTCAGCATCCGCATCGGCGTDesign primers
1891781GCATCGGCGTCAGCATCCGCATCAGCATCCGCGTCGDesign primers
2120819TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
2366177CAGAATCAAAATCATAATCAGAAGDesign primers
2396749ATTTTTCTGATTCTTTTTCTGGTTCTTTTTCTGGTTDesign primers
2427346TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2657545ATC-ATC-ATC-ATC-TTC-ATC-TTC-ATCDesign primers
2660158CTAATTCTGATTCTAATTGTAATTDesign primers
2796628CACTAA-CACTAA-CACGAA-CGCTAADesign primers

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