Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes serotype 7 str. SLCC2482

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
94553AAACAGCTAAAGAAACAGCAAATGAAACAACAAAAGDesign primers
162617TAGTACCGCCAACACCAGTACCACCAACACCAGTGCCACCAACACDesign primers
173060GGGTCAACTGGATCAACCGGATTTACTGGATCAACCGGGTCAACTGGATTGACCDesign primers
353091TTGCTTGTTTTG-TTGCTTGTTTTG-TTGCTGTTTTTGDesign primers
545403AGAAAAAGCAGATAAAGCAGAAAAAACDesign primers
592849AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
622665TTTGTATTCGTATTGGTATTTTTADesign primers
672109GTAACAAAAAATACACCAAAAGATACACCAAAAAATACACCAAAAAATACACCAAAAGATACACCAAAAGATDesign primers
692448AAAAAACAAATAAAAATAAAAAAATDesign primers
755332TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
916577AATTTGTAA-AACCTATAA-AACCTATAA-AACCTATAA-AACCTATAA-AACCTATAADesign primers
992289AGAACAAAAACAACAACAAGAAAADesign primers
1023641AAAAAGAAGAAGAAAACGAAACAGDesign primers
1159622ATAAAAGAAATAAAACAAATACAAGAADesign primers
1163119TGCACATGTACATGTACATGCGCADesign primers
1186761ACCCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1186852ATCCGGTAGACCCAGTAGACCCGGTAGACCCAGTAGACCCGGTAGACCCAGTCADesign primers
1336259CCAACGCCAAATCCAACACCAGATCCGACGCCAAATDesign primers
1422866TTTTTTTTATTTTTCTTTCTTTTGTDesign primers
1658979ATTAGCAATAGCATTATCATTATCDesign primers
1664143GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1887552CATCGG-CATCGG-CATCCG-CATCAG-CATCCG-CATCAG-CATCCG-CATCAG-CATCCG-CATCAG-CGTCGG-CATCCG-CATCAG-CGTCGG-CATCAGDesign primers
1887996CGTCGG-CATCGG-CATCCG-CATCGG-CATCGG-CGTCAG-CATCCG-CATCCG-CATCGG-CATCGG-CGTCGG-CATCAG-CGTCAG-CATCCG-CATCGG-CGTCGG-CATCGG-CATCAG-CGTCAG-CATCGGDesign primers
1888117GTCAGCATCCGCATCGGC-GTCAGCATCCGCATCGGC-GTCAGCATCCGCATCCGCDesign primers
1888172TCCGCATCAGCGTCAGCGTCGGCATCAGCGTCGGCATCCGCATCAGCATCAGCADesign primers
1888227CAGCGTCCGCATCAGCGTCGGCATCCGCATCCGCATDesign primers
1888264AGCATCAGCGTCGGCGTCAGCATCGGCGTCAGCGTCAGCGTCAGCATCAGCGTCAGCATCCGCATCGGCGTCDesign primers
1888337GCATCGGCGTCCGCATCAGCGTCCGCATCGGCGTCADesign primers
1888400TCAGCATCGGCGTCAGCATCCGCATCCGCATCAGCGTCCGCATCAGCGTCGGCATCAGCGTCAGCATCCGCATCAGCGTCGGCGTCAGCATCCGCADesign primers
1888497CGGCGTCAGCAT-CGGCGTCAGCAT-CGGCGTCCGCATDesign primers
1888534CGCATCGGCGTCAGCATCGGCGTCCGCATCCGCATCDesign primers
1888571GCGTCAGCATCGGCGTCCGCATCGGCGTCAGCATCAGCGTCAGCATCGGCGTCAGCATCCDesign primers
1888651GTCAGCGTCGGCATCAGCGTCGGCDesign primers
1888703GCGTCGGCATCGGCATCAGCGTCAGCATCCGCATCGGCGTCAGCATCCGCATCGGCGTCAGCATCGGCGTCADesign primers
1888787GCATCGGCATCAGCGTCAGCATCAGCGTCGGCATCCDesign primers
1888850TCAGCGTCGGCATCCGCATCAGCGTCGGCATCAGCGTCAGCGTCGGCATCCGCATCAGCGTCAGCGTCAGCATCAGCGTCGGCGTCGGCGDesign primers
1888941CGGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCAGCGTCGGCATCCGCATCAGCGTCAGCGTCAGCATCCGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCGGCGTCGGCATDesign primers
1889069GCATCA-GCATCA-GCGTCA-GCGTCADesign primers
2033577TCAGCTTTTTCAGCAGCAGCTTTCTCGGCAGCAGCTTTGTCAGCCDesign primers
2118982TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
2125006TT-TT-TN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
2391637TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2399325CTTTTTCATCCTTTTTCCCCCTTTTTTATGDesign primers
2457939CTCTTTTACTATTTTACTTTTTTADesign primers
2720893TTTGCTTTTGATTTGTTTTTTATTTACTTTTAADesign primers
2747443CAACAACACCAATAACAAAAACAADesign primers

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