Microsatellites /Tandem Repeats database

Genome: Actinobacillus suis H91-0380

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
78026TCTGTTCTATTCTGTTTTCTTCTGTTTTGTDesign primers
565543TAGCC-TGGCA-TTGCA-TTGCA-TTGCA-TTGCA-TTGCA-TTGCA-TTGCADesign primers
577759ATAATAATACTAATTATAAAAATAATAATGDesign primers
837313AGCAGTT-GTTGGTT-GTTGGTT-GTTGGTT-GTTGGTT-GTTGGTT-GTTGGTT-GTTGGTT-GTTGGTT-GTTGGTT-GTTGGTT-GTTGGTTDesign primers
939946ACATTTCATTACATAAAATTAAATTDesign primers
992891CCAATTTGCAAAAATTTGCACTAATTTGCCDesign primers
1186085GGCGCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCA-GCTCCADesign primers
1195086CAAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
1223786GCGTTTGCGTTAGCATTTGCGTTAGCGTTGDesign primers
1225768GCTTTAGCTTTGGCTTCTTTTTCAGCTTTTAGTTTCGCTTCTTTTTCAGCTTTTTCTTTCGCTTCTTTCTCADesign primers
1283467TTAATTAAAAATAATTTAAATCAATTAAATDesign primers
1455097TA-CG-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-ADesign primers
1455143AA-AN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
1455448NN-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AADesign primers
1475465ACCATCTTTACCGTCTTTGCCATCTTTDesign primers
1477109ACCGTCTTT-GCCGTCTTT-GCCGTCTTTDesign primers
1521812AGGATGAGGTTGAGGCTGAGGCTGDesign primers
1556141TCACCACCGTCACCGCCGTCACCGCCGDesign primers
1620500TGGATCTTGTGGAACAGGTTCTTGAGGAACAGGCTCTTGAGGAACTGGCTCTTGTGGAACAGGTTCTTGAGGAACTGGCTCTTGAGGAACAGGTTCTTGTGGAACTGGCTCTTGAGGAACAGGTTCTTGAGGAACAGGTTCTTGTGGAACAGGTTCTTGAGGAACTGGTTCTTGAGGAATTGGCTCTTGTGGAATTGGTTGTTGTGGATCDesign primers
1646483TTTTCTTTTCCTTTTTATTTTTGTDesign primers
1817310AAGGGAA-AAGGGAA-AAGAGAA-AAGAGAADesign primers
2131214CAGCAGCGGCAGCAGTAGCAGCAGDesign primers
2281791CATGACCATGATCACGACCATCACDesign primers
2396566CTCAGC-CTCAGC-CTCAAC-CTCATCDesign primers
2406637GCTGCTTCTGCTGCTGCATCTGCTDesign primers
2409258CGCCTGGGCCTGCGCTTGCGACTGDesign primers
2443113ATTTTCCGTGAGCTTCCGTGTTTCTCCGTGDesign primers
2467177GCAAATACAACTGCTAACACAGCTAATGCAACAGCTAATACA-GCGAATACAACGGCTAATACAGCTAATGCAACAGCTAATACA-GCGAATACAACGGCTAATACAGCTAATACAACAGCGAATACA-GCGAATACAACGGCTAACACADesign primers
2469365TTACAAATGTTGCAAATGGTACAAATGDesign primers

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