Microsatellites /Tandem Repeats database

Genome: Streptococcus pyogenes A20

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
133406CTTGTTTTAGCTATTTTTAGCTTGTTTAACDesign primers
264677AATAAAAAAGTACAAAAAAAGTAAAAAAAGAGTDesign primers
299250ATCAAACAAAAATCAAAGAAACAACAAAGAAAADesign primers
327829ATGGCAAATAAAGGCAAGTAATGGCTGATADesign primers
723728ACAGCACCAGCAACAGTAGCAGCADesign primers
781004GAACA-AAACA-AAACA-AAACA-AAACADesign primers
800339GCTGCTGCAGCTGCTGGTGGTGCTDesign primers
805940ATCATTATCATAAACATTATAATTDesign primers
879989TCTTTCTTTTTCTTTCTTCTTATTTCTGTTDesign primers
967607AGTTAAGTGAAGTTAAATTAATTTADesign primers
1082137CTTCATTTTCATCCTCATGTTCATDesign primers
1164329ACTGTCATGCACTGTTATTCACTGTCAATCDesign primers
1170396TTTTACAACTTTGTA-AAATACAACTTTGTA-AAATACAACTTTGTADesign primers
1181009ATCTTCTTC-ATCTTCTTC-ATTTTCTTCDesign primers
1358913TTTTCAAACTTTTCAAAGTTTTCAAGCDesign primers
1373962TGTTT-GTTTT-TGTTT-TGTTT-ATTTT-GTTTTDesign primers
1568313TTC-TTC-ATC-TTC-TTC-ATC-TTC-TTC-GTC-TTCDesign primers
1594370CTTTTTCCACCTTTTCCACTTATTCCADesign primers
1675487TTTTTCTGGTTTAGTTTCTGGTTTTTTATCTGGTGTDesign primers
1681728CCATCTCCAGACCAGTCATCTTCAGGCCAGTCATCTCCAGACCAGTCATCTCCAGACCAGDesign primers

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