Microsatellites /Tandem Repeats database

Genome: Francisella tularensis subsp. holarctica F92

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
44000AAGAATCAATAAGAGTCAACAAGATTGAATDesign primers
97537ACCTAAACTTAAACCTGAGCCTAADesign primers
168089GCTGCAAAAGCTCCAAAAGCTGCTAAADesign primers
205060AAAATAACA-ACAAAGACA-ACAAAGACA-ACAAAGACA-ACAAAGACA-ACAAAGACADesign primers
205119GACAATAAG-GATAATAAG-GATAATAAG-GATAATAAG-GATAATAAGDesign primers
230458TTTTCTTTGCTTTTCTTTGCTTTTTDesign primers
279046GATAACTCTGGGGATAACTTTGGAGATATCTTTGGGDesign primers
385130TTTAT-TTTAT-TTTAA-TTAAT-GTTATDesign primers
651271GAGATGAAAGTTCACCAAAAGAGCAAGAAAGTTCACCAAAAGAGCAAGAAAGTTCACCAAAAGDesign primers
665182GTAAAACTAGTATAACTATTAAAACTADesign primers
821582TCATATCT-ACATATCT-ACATATCTDesign primers
836410ATAATGCTATGTAATGATATATAATGTTACDesign primers
956219TTTATA-ATTATA-ATTATA-ATTATADesign primers
1055849ATTTATTTTTATATTAATATTTATATTGATDesign primers
1195668AAAGTTATGTTTTTTAAAGATATATTTTTAAAAATTATGATTATTDesign primers
1251231TTTTATATAAAT-TTTTATATAAAT-ACTTATATAAATDesign primers
1257105GTATTT-TTATTT-TTATTT-TTATTTDesign primers
1301744AATTAAAAAATTAATAAATTAATADesign primers
1386150TATTATTTTTATTATCATTATTTTDesign primers
1432025ATATTTTTTATATTCTTTATATTTTTTDesign primers
1441408ATTATTATTTTGATCATTATTTTGATCATTGTTTTGDesign primers
1538199AAATTAAAGTAAATAAAACTAATTTDesign primers
1548372CCGAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTADesign primers
1599296TTGATATTAATATTGATCGTGATADesign primers
1631379TA-AA-TA-TA-TA-AC-TA-TA-AA-AA-TA-TADesign primers
1673577CAGCAGCAACAGCAACAGCTGCAGCAGCAGDesign primers
1759330TAAAAAATCATGAATAATCATATAAAAGCADesign primers
1798551TACCGCCATTACCACCATCACCGCCATDesign primers
1814775CCGAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTADesign primers
1823653TCATTT-GCATTT-GCATTT-GCATTT-GCATTTDesign primers
1863938CCGAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTADesign primers

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