Microsatellites /Tandem Repeats database

Genome: Pseudomonas putida UW4

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
121829CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTGDesign primers
634922GCAGCG-GCAGCG-GCAGCG-GCAGCG-GCAGCGDesign primers
1374106CTTGCCTGTGGTGAGGGGGCTTGCCTGTGGCGAGGGGGCTTGCCTGTGGCGAGGGGGDesign primers
1916675CTACAG-GTACAG-GTACAG-GTACAG-GTACAG-GTACAG-GTACAG-GTACAG-GTACAG-GTACAGDesign primers
2471328ACGAAA-ACGAAA-ACGAAA-ACGAAADesign primers
2532907GTGCTG-GTGCTG-GTGCTG-GTGCTGDesign primers
2544921GAGAAAGTC-GAGAAAGTC-GAGAAAGTC-GAGAAAGTCDesign primers
2546383GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
2546710GATAAGGCC-GATAAGGCC-GATAAGGCCDesign primers
2565579CAGGCTGCATT-CAGGTTGAATT-CAGGTTGAATT-CAGGTTGAATT-CAGGTTGAATT-CAGGTTGAATTDesign primers
3110012ATTGTTCG-TTTGTTCG-TTTGTTCG-TTTGTTCG-TTTGTTCG-TTTGTTCGDesign primers
3641057CCGCCGCCGTGGCCTGCGCCGTTTCCGCCGCCGTGGCCTCCACCGTTTCCGCCGCCGTGGCCTCCACCGTTTDesign primers
3846235GGCAGCGGT-GGCAGCGGT-GGCAGCGGTDesign primers
5821053CGCCACCTGCTCCGCCACCTGCACCGCCGCCTGCTCDesign primers

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