Microsatellites /Tandem Repeats database

Genome: Pseudomonas putida UW4

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
121828TCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
130250ATTGGC-GTTGGC-GTTGGC-GTTGGCDesign primers
364685GCGGCTAAACCTGCTGCCAAACCTGCCGCTAAAACTDesign primers
449360TGCAGGTGCCGGTGCAGCTGCAGCDesign primers
455474GGTGCGGGCGCGGGTGCTGGTGGGDesign primers
634892GCG-GCG-GCA-GCA-GGA-GCA-GCG-GCA-ACC-GGA-GCA-GCG-GCA-GCG-GCADesign primers
1032747GGCGGTCAGGGTCGAGGTCAGGGTGGTGGTCATGGTDesign primers
1127795GCTTCGGCTTCCGCTGCGGCTTCCDesign primers
1374091CCCGTGGCGAGGGGTCTTGCCTGTGGTGAGGGGGCTTGCCTGTGGCGAGGGGGCTTGCCTGTGGCGAGGGGGCTTGDesign primers
1408414AAAAAGCCGAAAAACAAACCGAAAAACAAACCGAAADesign primers
1479464TCACGGTGGTGGACATCATGGCGGTGGATACCATGGCGGTGGACADesign primers
1889959ACAACGGCAACGACATCGACGACGDesign primers
1916672CTCCTA-CAGGTA-CAGGTA-CAGGTA-CAGGTA-CAGGTA-CAGGTA-CAGGTA-CAGGTADesign primers
2187842TTTGTAGCGAGGGGGCTTTTGTGGTGAGGGAGCTTTTGTGGTGAGGGGGCTDesign primers
2353710GCCGGTGCTGGTGCGGGTGGCGGTDesign primers
2450210GGTGATCATGGTGCGGCAGGCGATCATGATGCGGCAGGCGATGATGGTGCAGCAGGCGATCATGATGCGGCADesign primers
2471327GACGAA-AACGAA-AACGAA-AACGAADesign primers
2532906AGTGCT-GGTGCT-GGTGCT-GGTGCTDesign primers
2544858GAGAGGGTA-GAGAAGGTA-GAGAAGGTA-GAGAGGGTADesign primers
2544920GGAGAAAGT-CGAGAAAGT-CGAGAAAGT-CGAGAAAGTDesign primers
2545002GAAAAAGTCGAAAAGGTCGAAAAAGTCDesign primers
2546334TGGCGG-CAGCGG-TGGTGG-TGGCGG-CGGCAG-CGGTGG-TGGCGG-CAGCGG-AGGCGG-TGGCGG-TGGCGG-TGGCGGDesign primers
2546680GGCGATAAG-GCCGATAAG-GCTGATAAG-GCTGATAAG-GCCGATAAG-GCCGATAAGDesign primers
2547119CGGATGCCCCGGACGCTCCAGACGCCCCGGATGCTCCCGATGCCCCAGACGCGCDesign primers
2565573TGAGTGCAGGC-TGCATTCAGGT-TGAATTCAGGT-TGAATTCAGGT-TGAATTCAGGT-TGAATTCAGGTDesign primers
2730668CGTTGGCGTAGGCGATGGCGTTGGDesign primers
2856138GCTTGGGCCTGGGCTTGGGCGTGGDesign primers
3049449ACCCGTCC-ACCCGTCC-ACCCGTTCDesign primers
3110008TTTTATTG-TTCGTTTG-TTCGTTTG-TTCGTTTG-TTCGTTTG-TTCGTTTG-TTCGTTTG-TTCGTTTGDesign primers
3129908CGATCATAGTCGCTACGATCATAGCCACGACGATCATAGTCACGGDesign primers
3335753CGATGGCGATGCCGTTGGCGATGTDesign primers
3404741CGCTGGTGCTGGCGCTGGCGGTGGDesign primers
3415482CCGGCTGAACGCCCGGATCAACGCCCGGTTGAATGCDesign primers
3641054ATGCCGCCGCCGTGGCCTGCGCCGTTTCCGCCGCCGTGGCCTCCACCGTTTCCGCCGCCGTGGCCTCCACCGDesign primers
3641714TGCCCTGGTTGCCCTGGCTGCCATGGTDesign primers
3644155ACCAGCAACAGCGCCAGCACCCGCDesign primers
3694276CTGCGCCTGCACCTGCGCCTGAGCDesign primers
3741154CTACAGGTACAGTTACAGGTACAGDesign primers
3789220GCACCA-GCACCA-GCAACA-GCGCCADesign primers
3846097GGTAGTGGTGGTGGCGGCGGGGGTGGTGGCGGTAGTGGTGGAGGCDesign primers
3846232GGAGGCAGCGGTGGCAGCGGTGGCAGCDesign primers
3956353TTCAGCGGCTTTCTGTTTTGAACGGCTCTCTGTTTTCAACGGCTTTCTGTTDesign primers
4003554CAGGTGCCGGTGCAGGTGCAGGCGDesign primers
4098543GCGCCT-GCGCCT-GCTCCT-GCGCCTDesign primers
4237052GGAGCTGGAACTGGAGCAGCAGCTDesign primers
4394437AGCAGCAGCGGCAGCCGGAGCGGCAGCAGCAGCGCCDesign primers
4449924TTCGTCGCTTGCAGGTGCCTCGTTTGCAGGTGTCTCGCTTGCAGGDesign primers
4469373CGGCTCGGGTTCAGGCTCAGGTTCCGGCTCGGGTTCDesign primers
4744023CGCGCCCTGAACTCCCCCTGAACGCACTCTGAADesign primers
4772588GGCTCAAGG-CGCTCAAGG-CGCTCAAGGDesign primers
5038759CATGCCGCC-CATGCCGCC-CATACCGCCDesign primers
5420813GGCTTCTTCGGTTTCTTCGGCTTCTTGDesign primers
5727146AATCAAGCCCTGAACCAAGTCCTGAACCAAGTCCTGDesign primers
5803641CGGCCGTACCGGCCGTGCCGGCCGTTCDesign primers
5803891CGCAAGGACAAAGGCAAGGACAAGGGCAAGGAAAAADesign primers
5821052TCGCCACCTGCTCCGCCACCTGCACCGCCGCCTGCTDesign primers
5846926GGTGTTGTTGGTGGTGTTGGTGTTGATDesign primers
5997818GCAGCAGGCTTTGCAGCAGCCGGCTTGGCGGCAACTGGCTTGGCADesign primers
5997895TGCAGCTGGTTTTGCGGCTGGTTTAGCAGCAGGTTTDesign primers
5998045GGCAGCTGGTTTAGCAGCCGGTTTTGCCGCTGGTTTDesign primers
6055373GACGGCGACGGAGACCGCGTCGGCDesign primers

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