Microsatellites /Tandem Repeats database

Genome: Microcoleus sp. PCC 7113

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
226998GGTAATT-GGTAATT-GGTAATT-GGTAATTDesign primers
228246AGGCAGA-AGGCAGA-AGGCAGA-AGGCAGA-AGGCAGADesign primers
289377GGTAATG-GGTAATG-GGTAATG-GGTAATGDesign primers
342077CACTGAGGTTGGCAC-CACTGAGGTTGGCAC-CACTGAGGTTGGCAC-CACTGAGGTTGGCACDesign primers
357212ATTACCA-ATTACCA-ATTACCA-ATTACCA-ATTACCA-ATTACCADesign primers
394331GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAGDesign primers
407688TTATTCCTT-TTATTCCTT-TTATTCCTTDesign primers
537740CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGCDesign primers
540089AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
561728TGGAGAGGGAGT-TGGAGAGGGAGT-TGGAGAGGGAGT-TGGAGAGGGAGTDesign primers
691180AGATAG-AGATAG-AGATAG-AGATAGDesign primers
830284GGGGAGAT-GGGGAGAT-GGGGAGATDesign primers
874301GGGGAGCT-GGGGAGCT-GGGGAGCTDesign primers
874326GGGAGCTG-GGGAGCTG-GGGAGCTGDesign primers
884768CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTGDesign primers
884875TTCTACC-TTCTACC-TTCTACC-TTCTACC-TTCTACCDesign primers
884911TCTGCCT-TCTGCCT-TCTGCCT-TCTGCCTDesign primers
1118052TTACCCA-TTACCCA-TTACCCA-TTACCCA-TTACCCA-TTACCCADesign primers
1162953AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
1232677CTGAATCAT-CTGAATCAT-CTGAATCATDesign primers
1238736AGCACCCC-AGCACCCC-AGCACCCC-AGCACCCCDesign primers
1252371CCCAAC-CCCAAC-CCCAAC-CCCAACDesign primers
1252402CCAACC-CCAACC-CCAACC-CCAACCDesign primers
1252467CCCAAC-CCCAAC-CCCAAC-CCCAACDesign primers
1378150CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTGDesign primers
1447382ATTACCC-ATTACCC-ATTACCC-ATTACCC-ATTACCC-ATTACCCDesign primers
1535974AGCAGGGGAGCGGGGG-AGCAGGGGAGCGGGGG-AGCAGGGGAGCGGGGGDesign primers
1782605AAGGGGGAC-AAGGGGGAC-AAGGGGGACDesign primers
1935000CCGCGTCC-CCGCGTCC-CCGCGTCCDesign primers
1992547AATTGCG-AATTGCG-AATTGCG-AATTGCGDesign primers
2228940CCATTAC-CCATTAC-CCATTAC-CCATTAC-CCATTACDesign primers
2246289GG-GG-AG-CG-GG-GG-AG-CG-GG-GG-AG-CGDesign primers
2252586CTCCCCTG-CTCCCCTG-CTCCCCTG-CTCCCCTG-CTCCCCTG-CTCCCCTG-CTCCCCTG-CTCCCCTG-CTCCCCTGDesign primers
2282531TCTGCCT-TCTGCCT-TCTGCCT-TCTGCCTDesign primers
2414602ACACCA-ACACCA-ACACCA-ACACCADesign primers
2420193TGGGTAA-TGGGTAA-TGGGTAA-TGGGTAADesign primers
2453986ATTACCC-ATTACCC-ATTACCC-ATTACCC-ATTACCC-ATTACCCDesign primers
2463514GCTCCCCC-GCTCCCCC-GCTCCCCCDesign primers
2721146CCGCACCC-CCGCACCC-CCGCACCCDesign primers
2730871AGACAAGGA-AGACAAGGA-AGACAAGGADesign primers
2737059ATCCCAA-ATCCCAA-ATCCCAA-ATCCCAADesign primers
2786770GGGGAGCT-GGGGAGCT-GGGGAGCT-GGGGAGCTDesign primers
2834033GCTCCCCC-GCTCCCCC-GCTCCCCC-GCTCCCCCDesign primers
2834073GCTCCCCC-GCTCCCCC-GCTCCCCCDesign primers
2882381CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGCDesign primers
2899050CACCTCAG-CACCTCAG-CACCTCAGDesign primers
2902943GGCAGGG-GGCAGGG-GGCAGGG-GGCAGGGDesign primers
2903020GGCAGAT-GGCAGAT-GGCAGAT-GGCAGATDesign primers
2938033GTTGGCTCCACTCAA-GTTGGCTCCACTCAA-GTTGGCTCCACTCAA-GTTGGCTCCACTCAA-GTTGGCTCCACTCAADesign primers
2971978GCTCCCCT-GCTCCCCT-GCTCCCCT-GCTCCCCTDesign primers
3026856CCTAAA-CCTAAA-CCTAAA-CCTAAADesign primers
3031765AGGCAAA-AGGCAAA-AGGCAAA-AGGCAAADesign primers
3035485CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTA-CCTTCTADesign primers
3104524TTTTGAC-TTTTGAC-TTTTGAC-TTTTGACDesign primers
3334188GCGGGGGT-GCGGGGGT-GCGGGGGT-GCGGGGGTDesign primers
3339931GCTGTGCCCGAACCGGAG-GCTGTGCCCGAACCGGAG-GCTGTGCCCGAACCGGAG-GCTGTGCCCGAACCGGAG-GCTGTGCCCGAACCGGAG-GCTGTGCCCGAACCGGAGDesign primers
3340510GTGCTGCCACCACCC-GTGCTGCCACCACCC-GTGCTGCCACCACCCDesign primers
3474013ACACGG-ACACGG-ACACGG-ACACGGDesign primers
3585222GGGGAAT-GGGGAAT-GGGGAAT-GGGGAAT-GGGGAATDesign primers
3667818AAGAAGGCAGAAAA-AAGAAGGCAGAAAA-AAGAAGGCAGAAAADesign primers
3681095ATATAGGAG-ATATAGGAG-ATATAGGAGDesign primers
3783947AACCTTCA-AACCTTCA-AACCTTCA-AACCTTCADesign primers
3791381TTGATTCCTTTGATGATA-TTGATTCCTTTGATGATA-TTGATTCCTTTGATGATADesign primers
3890444GCAGGGGAGCGGGGGT-GCAGGGGAGCGGGGGT-GCAGGGGAGCGGGGGTDesign primers
3890493CAGGGGTG-CAGGGGTG-CAGGGGTGDesign primers
3890523TGCAGGGG-TGCAGGGG-TGCAGGGG-TGCAGGGGDesign primers
3934895GCTGATA-GCTGATA-GCTGATA-GCTGATA-GCTGATADesign primers
3964633GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
4140686CCAATGCC-CCAATGCC-CCAATGCC-CCAATGCCDesign primers
4166466CTGCCTC-CTGCCTC-CTGCCTC-CTGCCTCDesign primers
4198972GG-GG-AG-CG-GG-GG-AG-CG-GG-GG-AG-CGDesign primers
4240291CCAACC-CCAACC-CCAACC-CCAACCDesign primers
4250416TTCTGCC-TTCTGCC-TTCTGCC-TTCTGCC-TTCTGCC-TTCTGCC-TTCTGCC-TTCTGCC-TTCTGCC-TTCTGCC-TTCTGCCDesign primers
4598009ATGACAACGACC-ATGACAACGACC-ATGACAACGACCDesign primers
4649196ACCCAGTCCGAATCCTTC-ACCCAGTCCGAATCCTTC-ACCCAGTCCGAATCCTTC-ACCCAGTCCGAATCCTTC-ACCCAGTCCGAATCCTTCDesign primers
4677047CCAAGC-CCAAGC-CCAAGC-CCAAGC-CCAAGCDesign primers
4717129CTCCCCCA-CTCCCCCA-CTCCCCCA-CTCCCCCADesign primers
4745230AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
4835513CCATTG-CCATTG-CCATTG-CCATTGDesign primers
4853312CTGCTCCC-CTGCTCCC-CTGCTCCC-CTGCTCCCDesign primers
4983275ATTCCCC-ATTCCCC-ATTCCCC-ATTCCCC-ATTCCCCDesign primers
5020831ATGGTC-ATGGTC-ATGGTC-ATGGTC-ATGGTCDesign primers
5106942ACTGGCTACCGG-ACTGGCTACCGG-ACTGGCTACCGGDesign primers
5111073GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
5111102GCAGGAG-GCAGGAG-GCAGGAG-GCAGGAG-GCAGGAG-GCAGGAGDesign primers
5167243GGTGCTGA-GGTGCTGA-GGTGCTGADesign primers
5174570CTTGAGCGCCGAGAA-CTTGAGCGCCGAGAA-CTTGAGCGCCGAGAA-CTTGAGCGCCGAGAADesign primers
5436591AAGTCAA-AAGTCAA-AAGTCAA-AAGTCAADesign primers
5583755AGCTCCCC-AGCTCCCC-AGCTCCCCDesign primers
5588105ACCGATTAG-ACCGATTAG-ACCGATTAG-ACCGATTAG-ACCGATTAGDesign primers
5599012TGCTGGGG-TGCTGGGG-TGCTGGGGDesign primers
5840417AAGGCAG-AAGGCAG-AAGGCAG-AAGGCAGDesign primers
5940578GGTGCTGA-GGTGCTGA-GGTGCTGA-GGTGCTGADesign primers
5954029GGGTGCGG-GGGTGCGG-GGGTGCGGDesign primers
5963867CAGGTTA-CAGGTTA-CAGGTTA-CAGGTTADesign primers
6079103GGCAGAA-GGCAGAA-GGCAGAA-GGCAGAADesign primers
6131599AAAATCC-AAAATCC-AAAATCC-AAAATCCDesign primers
6303234CCCATGCCG-CCCATGCCG-CCCATGCCG-CCCATGCCG-CCCATGCCG-CCCATGCCGDesign primers
6335688GGAGTTGGCGTT-GGAGTTGGCGTT-GGAGTTGGCGTT-GGAGTTGGCGTT-GGAGTTGGCGTT-GGAGTTGGCGTT-GGAGTTGGCGTTDesign primers
6357006CCTTCTG-CCTTCTG-CCTTCTG-CCTTCTGDesign primers
6357888AAGCCCAACTCCTACACC-AAGCCCAACTCCTACACC-AAGCCCAACTCCTACACCDesign primers
6389491GGGGAGCA-GGGGAGCA-GGGGAGCADesign primers
6454363CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGCDesign primers
6619907GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAGDesign primers
6659684CCGATTA-CCGATTA-CCGATTA-CCGATTADesign primers
6689461GGACAAGGG-GGACAAGGG-GGACAAGGGDesign primers
6764087CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGCDesign primers
6801538GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAGDesign primers
6822770CTATTAC-CTATTAC-CTATTAC-CTATTACDesign primers
6824580TGCCTG-TGCCTG-TGCCTG-TGCCTGDesign primers
6854765GGGGAGCT-GGGGAGCT-GGGGAGCTDesign primers
6944238CATTACC-CATTACC-CATTACC-CATTACC-CATTACC-CATTACCDesign primers
7003377TATGCCT-TATGCCT-TATGCCT-TATGCCT-TATGCCTDesign primers
7022292TCTGCCT-TCTGCCT-TCTGCCT-TCTGCCTDesign primers
7028321GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAGDesign primers
7084380CATTACC-CATTACC-CATTACC-CATTACCDesign primers
7126226CCACTCAAGTCTGCG-CCACTCAAGTCTGCG-CCACTCAAGTCTGCG-CCACTCAAGTCTGCG-CCACTCAAGTCTGCGDesign primers
7259021CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGC-CTTCTGCDesign primers
7344833ATTACCT-ATTACCT-ATTACCT-ATTACCT-ATTACCTDesign primers
7421586GACAAGGGG-GACAAGGGG-GACAAGGGGDesign primers

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