Microsatellites /Tandem Repeats database

Genome: Bacillus subtilis subsp. subtilis str. BSP1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
283189AA-AA-AT-AA-AA-AA-AC-AA-AA-AA-AG-AA-ADesign primers
313452TGCTGTCCTTGTTGTCCTTGCTGTCCCDesign primers
651168AACGGTTCATCAAACAGTTCGTCAAACGGCTCATCTDesign primers
793472GCGCCTGCGCCGGCGGCTGCGTCTDesign primers
874836ATATATAATGTTATATAACGTTATATAATADesign primers
1346236TA-AA-GA-TA-AT-GA-AA-AA-GA-TA-TA-GADesign primers
1465870ATGATGACGATGATGATCTTGATGDesign primers
1612427TCATAAAAAAGAATAAAAAAGTATAAAAAADesign primers
1682220TCGAAAAACAGAGAAAAACATAGAATAACADesign primers
1943165ATATCAGGTTTGACATCAGGTTTTGCATCAGGTTTGDesign primers
2010067GTTCTTCAT-ATTCTTCAT-ATTCTTCATDesign primers
2131097TTAATTTTATTTTTAAATTTAATADesign primers
2335533GTT-TTT-ATT-ATT-GTT-GTT-GTT-GCG-TTT-ATT-TTT-TTT-GTT-GTT-GTT-ATT-CTT-CTT-GTT-TTT-GTTDesign primers
2560170CTTCTTCTTCTTCCTCTTCCTCTTDesign primers
2652062TTTTTTATTTTTGTTTTTTTCTTTTTTCTTDesign primers
2789993GGCGGCGGTTATGGCGGAGGATATGGCGGAGGATATGGCGGAGGTTACDesign primers
2952585AAAAACGAACAAAAACCAATAAAAACGGCCDesign primers
2956675TTTGTTTTTTCTTGTTTTCTTTGGTDesign primers
3370179TGCTTTTGTTTTTGCTTCTGCTTGDesign primers
3376487TCTTTCTGTTTCTCTTTTGCTTTCDesign primers
3845352TGATCTTGGTTTTGATCTTTATTTTCGTCTTGGTTTDesign primers

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