Microsatellites /Tandem Repeats database

Genome: Riemerella anatipestifer RA-CH-2

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
46214AA-AA-AC-AA-AA-AG-TA-AA-AC-AA-AA-AADesign primers
173297TAAA-GGAA-GGAA-GGAA-GGAA-GGAA-GGAA-GGAA-GGAADesign primers
182718ATATTTAGGGGGACACTTAGGGGGATACTTAGGGGGDesign primers
259147AAAGAAAAGGAAAGAGAAGAAAAGGAAAAADesign primers
390070TAACCGTAACCGTAGCCATAACCGTAGCCATAACCGTAACCGTAGCCTDesign primers
436053TTTGTGAAAATTTGTTACAAATTATGAAAADesign primers
474769AAATTA-AAATTA-AAATCA-AAATCADesign primers
481795GTTCAAGGTTCAAAATTCAAGGTTTAAGDesign primers
688281GTC-AAC-AGC-ACC-TTT-AGC-AGC-ATC-AGC-AGC-ACC-TTT-AGC-AGC-GTC-AGC-AGC-AGC-ATC-AGC-AGCDesign primers
688361CAGCTACAGTAGAAGCAGAATCTACAACAGTAGCAGCAGAATCAACAACAGCAGCAGCAGAATDesign primers
748978AGTTAGAAGATAGAAATTAGAAATTAGADesign primers
749040AATCTAA-CATCTAA-CATCTAA-CATCTAADesign primers
807305AAATATTAGAATATTAAATTATTADesign primers
946835AGC-GGC-AAC-GGC-AGC-AGC-AGC-GGCDesign primers
1172394AAAAT-AAAAT-TAAAT-ATAAT-CAAATDesign primers
1249313GCGATTGCCATTGCGAATGAGATTDesign primers
1250572TAGGTATTAAATTAGACCCTTTAGGTCTTACATTAGACCCTCTAGGTATTAAAGTAGAGGTTTTGGATATTAAATTAGACCCTTDesign primers
1334824AAAATTAAACAATTAAAAATTTAADesign primers
1548437TAAAATAAATTATAATAATAAAAAADesign primers
1550986TATAAACAACTGTATCAATAACTGTATTAACAACCGDesign primers
1553330TATTTTGGTTATCCTTTGGTTATCCTTTGGTTADesign primers
1638032AAAAATAAAAAATTAAAACAATAADesign primers
1678515GAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
1875455GT-AA-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-ACDesign primers
1912489TCTTTATCGTTATTTTTATTTTTADesign primers

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