Microsatellites /Tandem Repeats database

Genome: Bacillus thuringiensis serovar thuringiensis str. IS5056

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
457942TATTTT-TATTTT-TATTTT-TATTTT-TATTTTDesign primers
921603GAAAAACCAGGTGAAGGAACA-GAAAAACCAGGTGAAGGAACA-GAAAAACCAGGTGAAGGAACA-GAAAAACCAGGTGAAGGAACA-GAAAAACCAGGTGAAGGAACA-GAAAAACCAGGTGAAGGAACA-GAAAAACCAGGTGAAGGAACADesign primers
980223ACAGAG-ACAGAG-ACAGAG-ACAGAGDesign primers
1223033CCAGTCGGT-CCAGTCGGT-CCAGTCGGTDesign primers
1231290AGAACAGCC-AGAACAGCC-AGAACAGCC-AGAACAGCCDesign primers
1280859AAGAAAGTAGAAGAACAG-AAGAAAGTAGAAGAACAG-AAGAAAGTAGAAGAACAGDesign primers
1529469TCATGGACA-TCATGGACA-TCATGGACADesign primers
1939103AATAAC-AATAAC-AATAAC-AATAACDesign primers
2148948AGGAACTGGAACAGG-AGGAACTGGAACAGG-AGGAACTGGAACAGG-AGGAACTGGAACAGGDesign primers
2358628CCAGTAGCC-CCAGTAGCC-CCAGTAGCCDesign primers
2358745CCAGTAGTT-CCAGTAGTT-CCAGTAGTTDesign primers
2377829AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGCDesign primers
2378216AACGGGAGT-AACGGGAGT-AACGGGAGTDesign primers
2378301GGAGTAACG-GGAGTAACG-GGAGTAACGDesign primers
2379991ACAGGTCCA-ACAGGTCCA-ACAGGTCCA-ACAGGTCCA-ACAGGTCCA-ACAGGTCCADesign primers
2380173AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGCDesign primers
2380262CAACAGGTC-CAACAGGTC-CAACAGGTCDesign primers
2644864GGAGTAACGGGTCCAACA-GGAGTAACGGGTCCAACA-GGAGTAACGGGTCCAACA-GGAGTAACGGGTCCAACADesign primers
3251620GGTACTGGT-GGTACTGGT-GGTACTGGTDesign primers
3777585GACCTGTTG-GACCTGTTG-GACCTGTTG-GACCTGTTG-GACCTGTTGDesign primers
3777740CCTGTTGGA-CCTGTTGGA-CCTGTTGGA-CCTGTTGGA-CCTGTTGGADesign primers
4536616GGTTTTTCTACTTCT-GGTTTTTCTACTTCT-GGTTTTTCTACTTCTDesign primers
4899086TCTTTCGGT-TCTTTCGGT-TCTTTCGGT-TCTTTCGGT-TCTTTCGGTDesign primers

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