Microsatellites /Tandem Repeats database

Genome: Bacillus thuringiensis serovar thuringiensis str. IS5056

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
201820CTAATTATAA-CTAATTATAA-CTAAATATAA-CTAGTTATAADesign primers
441331CCAGAACCATTGCCACCAGAACCGTTGCCACCAGAACCGTTGCCADesign primers
457942TATTTT-TATTTT-TATTTT-TATTTT-TATTTTDesign primers
921600CCGGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGADesign primers
980223ACAGAG-ACAGAG-ACAGAG-ACAGAGDesign primers
1090674GAAACACCAGATCCAGAAAAACCTGGAACACCAGATCCAGAAAAGCCTGGAACACCAGATCCAGAAAAACCTDesign primers
1090747GAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAAACCTGGAACACCGAATCCAGAAAAACCTGDesign primers
1090839CCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAAACCTGGAACACCGAATCCAGAGAAACCTGGAACACCGAATCCAGAAAAADesign primers
1223033CCAGTCGGT-CCAGTCGGT-CCAGTCGGTDesign primers
1231290AGAACAGCC-AGAACAGCC-AGAACAGCC-AGAACAGCCDesign primers
1280855ACAAAAGAAAGTAGAAGAACAGAAGAAAGTAGAAGAACAGAAGAAAGTAGAAGADesign primers
1280910CAGAAGAAAGCAGAAGAA-CAGAAGAAAGCAGAAGAA-CAGAAGAAAGTAGAAGAA-CAGAAGAAAGCAGAAGAA-CAGAAGAAAGCAGAAGAADesign primers
1281011AGAAGAACAGAAGAAAGC-AGAAGAACAGAAGAAAGC-AGAAGAACAAAAGAAAGCDesign primers
1522665TTTCTTAGCATCTTCTTCAGCTTTTTTCTTGGCCTCTTCTTCAGCTTTCTTCTTAGCTTCTTCTTCAGCTTTTTTCTTAGCTTCTTCTTCAGCTTTDesign primers
1529469TCATGGACA-TCATGGACA-TCATGGACADesign primers
1939103AATAAC-AATAAC-AATAAC-AATAACDesign primers
2148805GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGGGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACTDesign primers
2358628CCAGTAGCC-CCAGTAGCC-CCAGTAGCCDesign primers
2358745CCAGTAGTT-CCAGTAGTT-CCAGTAGTTDesign primers
2377824GGAGTAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACADesign primers
2377896GGAGCAACAGGAGCAACGGGAGTAACAGGAGCAACGGGAGCAACAGGAGCAACGDesign primers
2378018AACAGGAGCAACGGGAGTAACAGGAGCAACGGGAGCAACAGGAGCAACGGGAATDesign primers
2378216AACGGGAGT-AACGGGAGT-AACGGGAGTDesign primers
2378301GGAGTAACG-GGAGTAACG-GGAGTAACGDesign primers
2379989CGACAGGTC-CAACAGGTC-CAACAGGTC-CAACAGGTC-CAACAGGTC-CAACAGGTCDesign primers
2380141GGAGCAACAGGAGTAACA-GGAGCAACAGGAGTAACA-GGAGCAACAGGAGCAACA-GGAGCAACAGGAGCAACADesign primers
2380262CAACAGGTC-CAACAGGTC-CAACAGGTCDesign primers
2644840CCAACGGGAGTAACGGGT-CCAACGGGAGTAACGGGT-CCAACAGGAGTAACGGGT-CCAACAGGAGTAACGGGT-CCAACAGGAGTAACGGGTDesign primers
2971557GCTTTTTCTTCTTCTTTAGCTTTTACTTCTTCTTTAGCTTTTACTTCTTCTTTADesign primers
3001126GATATATTTAA-TATATATTTAA-TATATATTTAADesign primers
3112119GCCAACCACCATGTCCACCTTGCCAACCACCATGTCCGCCTTGCCAGCCACCATGTCCGCCTTGCCAACCACCGTGTCCGCCTTGCCAACCACCGTGTCCACCTTGCCAACCACCGTGTCCACCTTDesign primers
3228502TTTGGTTTTTGTACTTCTTCCTTAGGTTTTTGTACTTCTTCCTTAGGCTTTTGTACTTCTTCCDesign primers
3251620GGTACTGGT-GGTACTGGT-GGTACTGGTDesign primers
3777572GTTGGACCTGTTAGACCTGTTGGACCTGTTGGACCTGTTGGACCTGTTGGACCTGTTGGACCTGTTAGACCTDesign primers
3777711GACCTGTTGGGCCTGTTG-GACCTGTTGGGCCTGTTG-GACCTGTTGGACCTGTTG-GACCTGTTGGACCTGTTGDesign primers
4536571GGTTTTTCTACTTCT-GGTTTTTCTGCTTCT-GGTTTTTCTACTTCC-GGTTTTTCTACTTCT-GGTTTTTCTACTTCT-GGTTTTTCTACTTCTDesign primers
4899074GGTTCTTTCGGATCTTTCGGTTCTTTCGGTTCTTTCGGTTCTTTCGGTTCTTTCGGTTCTTTCGGATCTTCCDesign primers

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