Microsatellites /Tandem Repeats database

Genome: Bacillus thuringiensis serovar thuringiensis str. IS5056

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9073ATAATATACTATGATATATTATAAADesign primers
170832GCTAAGGTTGAAGCTAAGATAGAAGCTAATGCTGAADesign primers
176699CGTCTTTTAAGTCTTTTACATCTTTTADesign primers
201818ATCTAATTATAACTAATTATAACTAAATATAACTAGTTATDesign primers
379728AGAAAGCGAAAGTGAAAGCGAAAGTGAAAGDesign primers
441120ATTGCCACCTTGAGAGCCATTACCGCCGTGAGAGCCATTACCGCCGTGAGAGCCDesign primers
441199GAACCATTGCCGCCAGAGCCACTGCCACCAGAACCGTTACCACCAGAACCGTTACCACCAGAGCCACTGTCGCCAGAACCGTTACCACCAGAGCCACTGTCGCCAGAACCGTTACCGCCAGAACCGTTACCGCCAGAACCATTGCCACCAGAACCGTTGCCACCAGAACCGTTGCCACCAGAACCACTGCCGTCADesign primers
441430TTGTCACCAGAGCCACTGCCACCAGAACCATTGCCGCCAGAGCCADesign primers
441511CCAGAACCGTTACCGCCGGAACCATTGCCGCCAGAGCCGCTGCCGCCAGAACCACTATCGDesign primers
443832GGCGAAGGTGAAGGCGATGACGAADesign primers
457941GTATTT-TTATTT-TTATTT-TTATTT-TTATTTDesign primers
535501AGAAAAAGCAAAAGAAAAAGGAAADesign primers
548471AAATGAGTAAAAGAGTAAATGAATDesign primers
739383AGAACCTGCAAAACCTGCAAAACCTGCDesign primers
760829TCTGCTTCTGCATATGCTTTTGCTDesign primers
836761TTTTTATTTTTTTCTTATTTTTTTTDesign primers
848924TTGAGCTTTAGCTGCTTCTTTAGCTTTGGCCGCTTCACGAGCTTCAGCTGCTTCTTGAGCCTTAGCCGCTTGDesign primers
849010CTTGAGCTTTAGCCGCTTCACGAGCTTTAGCTGCTTCTTGAGCTTTAGCCGCTGDesign primers
849117TCTTGAGCTTTAGCTTCTGCTTGAGCTTCAGCATCTGCCTGAGCTTTAGCTGCTTCTTGAGCCTTAGCTGCTDesign primers
869976AAAGAAGTGGACAGAAGGGGAAAGAACTGTDesign primers
921594AAAGGGCCGGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGTDesign primers
979696CCTAAACAAGAAAATACTAAACAAGAACCTGTTAAACAAGAAAACACTAAGCAAGAGAATDesign primers
980221AAACAG-AGACAG-AGACAG-AGACAGDesign primers
1023813TGTTCGTAATTCTTCAGCTTGCATTTGTAGTTCTTCAGCTTGCGTTTGTAATTCTTCTGATTGDesign primers
1076467AAAGATAAAAAAGACAAAAAAGGTAAADesign primers
1090669GTCCAGAAACACCAGATCCAGAAAAACCTGGAACACCAGATCCAGAAAAGCCTGGAACACCAGATCCAGAAADesign primers
1090742ACCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAA-ACCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAA-GCCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAA-ACCTGGAACACCGAATCCAGAGAAACCTGGAACACCGAATCCAGAAAADesign primers
1110544CAAGAGATACAAAGATATACGAAGAGATAADesign primers
1134349TAGTTT-TATTTT-TACTTT-TACTTT-TACTTTDesign primers
1222894TGGTCCAGT-CGGTCCAGT-CGGTCCAGTDesign primers
1223031CACCAGTCGGTCCAGTCGGTCCAGTCGGTCCAGTCGGCCCAGTCGGTCCAGTTGGCCCAGTCGGCCCAGTCGDesign primers
1231257AGAAGAAGAGGAAAAAGAAGAACADesign primers
1231284AGAGCAAGA-ACAGCCAGA-ACAGCCAGA-ACAGCCAGA-ACAGCCAGA-ACAGCAAGADesign primers
1280849GGAAGGACAAAAGAAAGTAGAAGAACAGAAGAAAGTAGAAGAACAGAAGAAAGTDesign primers
1280904GAAGAACAGAAGAAAGCA-GAAGAACAGAAGAAAGCA-GAAGAACAGAAGAAAGTA-GAAGAACAGAAGAAAGCA-GAAGAACAGAAGAAAGCA-GAAGAACAAAAGAAAGTA-GAAGAACAGAAGAAAGCA-GAAGAACAGAAGAAAGCA-GAAGAACAAAAGAAAGCGDesign primers
1296568TTCAGCAGGCTTTTGCTCAGCTGGTTTTTGTTCAGCAGGTTTTTGDesign primers
1438760GAAGAAGAAAAGCGAAGAAAAGAAGAAGAAAAGAAAAGGCAAGAAGAAGAAAAGAAAAGGCAADesign primers
1471965AAATATTT-AAATATTT-AAGTATTTDesign primers
1473725AAAAATAAAATAAAAATAAAAAGAADesign primers
1522661GTTGTTTCTTAGCATCTTCTTCAGCTTTTTTCTTGGCCTCTTCTTCAGCTTTCTTCTTAGCTTCTTCTTCAGCTTTTTTCTTAGCTTCTTCTTCAGDesign primers
1522811GTTGTTGTTCTTGTTGCTGTTCTTGTTGTTDesign primers
1529468GTCATGGAC-ATCATGGAC-ATCATGGACDesign primers
1559091AGTTTAGTATTGTTTAGTGTAGTTADesign primers
1623603TTTTTATATTTTTGTATTTTTCTADesign primers
1701107AAGAAAAGGAAAGAAAAGCAAAGCADesign primers
1704559TATTAAATTATATTTAAATAAATTAAATTADesign primers
1718182TTGTAGGTTTTTGTATGATTTTGTAGGTTCDesign primers
1744444ATTGTTTTTGTTATTTTTATTGTGDesign primers
1902098TATATAATATATATTTATAAGTTATATATTTATATTATATATATADesign primers
1939102AAATAA-CAATAA-CAATAA-CAATAADesign primers
2148801TACCGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGGGG-AACTGGAACAGGAGG-AACTGGAACAGGAGGDesign primers
2265603CAAGAAGAATTAAAGAAACAAGAAGAACTGAAAAAACAAGAAGAGCAAAAGAAADesign primers
2265669AAGAAGCAAGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAACAAAATGAACAADesign primers
2285664GGATTAGCATTAGGACTAGGGTTADesign primers
2358627TCCAGTAGC-CCCAGTAGC-CCCAGTAGCDesign primers
2358706GAACCGGTAGAACCAGTAGAACCAGTADesign primers
2358744CCCAGTAGT-TCCAGTAGT-TCCAGTAGTDesign primers
2358870CCCGGTAGGTCCAGTGGAACCAGTAGGTCCAGTGGAACCAGTAGTTCCAGTGGAGCCGGTAGGTCCAGTAGCDesign primers
2359078CCAGTAGCCCCAGTAGTTCCAGTAGCCCCGGTAGGTCCAGTGGAACCAGTAGTTDesign primers
2359141CCGGTAGGTCCAGTAGCCCCAGTAGAGCCAGTAGCCCCGGTAGGTCCAGTGGAACCAGTAGTTCCAGTAGCCDesign primers
2359216GTAGATCCAGTGGAGCCAGTAAGTCCAGTGGAGCCAGTAGCCCCAGTAGAGCCADesign primers
2377791CCAACAGGAGCAACGGGA-GTAACAGGAGCAACGGGA-GTAACAGGAGCAACAGGA-GCAACAGGAGCAACAGGA-GCAACAGGAGCAACAGGA-GCAACGGGAGCAACAGGA-GCAACAGGAGCAACGGGA-GTAACAGGAGCAACGGGA-GCAACAGGAGCAACGGGADesign primers
2377963CAACAGGAGCAACGGGAATAACGGGAGCGACGGGAATAACGGGAGCAACAGGAATAACAGGAGCAACGGGAGTAACAGGAGCAACGGGAGCAACAGGAGCAACGGGAATAACGGGAGCAACAGGAACAACGGGAGTAACGGGAGCAACAGGAGTAACAGGAGCAACGGGAATAACGGGAADesign primers
2378179CAACGGGGGCAACGGGAATAACGGGAGCAACAGGAACAACGGGAGTAACGGGAGDesign primers
2378234AACGGGAGTAACGGGAGCAACGGGTGTDesign primers
2378262ACAGGAATAACAGGAGCAACGGGAATAACGGGAGCAACAGGAGTAACGGGAGTADesign primers
2378373GGAGCAACAGGAGCAACGGGAGTAACADesign primers
2379983CAGGGGCGA-CAGGTCCAA-CAGGTCCAA-CAGGTCCAA-CAGGTCCAA-CAGGTCCAADesign primers
2380139GTGGAGCAACAGGAGTAA-CAGGAGCAACAGGAGTAA-CAGGAGCAACAGGAGCAA-CAGGAGCAACAGGAGCAADesign primers
2380212AGGAGCAACAGGTTTAACAGGAGCAACAGGCCCAACAGGAGCAACAGGAGCAACDesign primers
2380267GGTCCAACA-GGTCCAACA-GGTCCAACADesign primers
2495844TTTTTTATTTTGTAGTTTTTATTTTTAADesign primers
2536371AAAGATAAAAATATAAAACGATAADesign primers
2537533AAAATAAAAACAAATAAGATACAATDesign primers
2602093GGT-TGT-GGT-CGT-TGT-GGT-GGT-TGT-GGTDesign primers
2602248TGGTACTACTGATACTACTGGTACTATDesign primers
2611110TCCACAAGTGGAGAATCCACATATGGAAAATCCACAAGTGGAAAADesign primers
2644834ACAGGCCCAACGGGAGTAACGGGTCCAACGGGAGTAACGGGTCCAACAGGAGTAACGGGTCCAACAGGAGTAACGGGTCCAACAGGAGTADesign primers
2743176GA-AA-AA-GA-AA-GA-GA-AA-TA-GA-AA-CADesign primers
2814765CAATCCCAATTATAATCCCAATCACAATTCCGATTADesign primers
2829637TCTTT-TATTT-TATTT-TATTT-TATTTDesign primers
2971449GCTTTTGCTATTTCTTTTGCTTTTGCTATTTCTTTTGCTTTCDesign primers
2971550TTCTTGCGCTTTTTCTTCTTCTTTAGCTTTTACTTCTTCTTTAGCTTTTACTTCDesign primers
2971638TCTTCTTTAACTTTTACTTCTTCTTTGACTTTTGCCTCTTCTTTAGGCTTTACTDesign primers
2971710TCTTCTTTAACTTTTACTTCTTCTTTGACTTTTGCCTCTTCTTTAGGCTTTACTDesign primers
2971782TCTTCTTTAACTTTTACTTCTTCTTTGACTTTTGCCTCTTCTTTAGGCTTTACTDesign primers
2971845GCTTTTACTTCTTCTTTA-ACTTTTACTTCTTCTTTA-ACTTTTGCCTCTTCTTTADesign primers
3001125TGATATATTTA-ATATATATTTA-ATATATATTTADesign primers
3017748CGATACATCGTCTTATGATATATCGACTTACGATACATCGTATACDesign primers
3035800GGAAATGAAAATGGAAAATGAAATDesign primers
3076616CCCTGAAACCATCCCTGTAACAATACCTGCAACCATDesign primers
3112105TCCATGTCCGCCCGGCCAACCACCATGTCCACCTTGCCAACCACCATGTCCGCCTTGCCAGCCACCATGTCCGCCTTGCCAACCACCGTGTCCGCCTTGCCAACCDesign primers
3112211CCGTGTCCACCTTGCCAACCA-CCGTGTCCACCTTGCCAACCA-CCGTGTCCGCCCGGCCAACCA-CCGTGTCCACCTTGCCAACCA-CCGTGTCCACCTTGCCAACCGDesign primers
3148634TTATATTAAATTATTTTTTATTCTADesign primers
3227667TT-GT-TT-TT-GT-GT-TT-GT-TT-TT-GT-TTDesign primers
3228496TCATCTTTTGGTTTTTGTACTTCTTCCTTAGGTTTTTGTACTTCTTCCTTAGGCTTTTGTACTDesign primers
3251619AGGTACTGG-TGGTACTGG-TGGTACTGGDesign primers
3293820CCTGGTGGA-CCTGGTGGA-CCTGATGGADesign primers
3480123AAGAAAAATAAGAAAAACAACAAAAATDesign primers
3506776AATCCATATGATCCATATAATCAATATDesign primers
3648566TTTATTTCATTTTCTATTATTTTTTDesign primers
3674961GGTGCTACTGGTGCTACCGGCGCTACTDesign primers
3675312GGTGCTACTGGTGCTACCGGCGCTACTDesign primers
3683980CATAAACAATCAAAAATAATCACAAACATTCATAAACGTTDesign primers
3755657TTGCTCCTCTTTCTTTGGTTCTTCTTTCTTTGGTTCCTCTTTTTTDesign primers
3777568TCCCGTTGG-ACCTGTTAG-ACCTGTTGG-ACCTGTTGG-ACCTGTTGG-ACCTGTTGG-ACCTGTTGG-ACCTGTTAGDesign primers
3777641CCTGTTGGGCCTGTTGGACCTGTTGGADesign primers
3777669CTGTTAGACCCGTTAGACCTGTTGGACCTGTTAGACCTGTTAGACDesign primers
3777715TGTTGGGCCTGTTGGACC-TGTTGGGCCTGTTGGACC-TGTTGGACCTGTTGGACC-TGTTGGACCTGTTGGACCDesign primers
3806120TTTTTGTTTTTTCTTGTTTTTTTTCDesign primers
3811504GTT-CTT-CTT-GTT-GTT-CTT-TTT-CTT-TTT-CTT-CTT-CTTDesign primers
3881237CAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
3914130AATCTTCAAACCTTCAAATCTTCCDesign primers
4018455TCACAACCACAATCTCAATTACAADesign primers
4061055TATTTTTTGAACATTTATTGAACATTTATTGAADesign primers
4137366GTTGTGGTA-ATTGTGGTA-ATTGTGGTADesign primers
4242687TTAAAAAAATGAATACAAAAATGATTAAAAAAGTAADesign primers
4282770ACAGCAATACCCACAGCAGTACTCACAGCAATATCADesign primers
4283150AAAAAAAAAGAAAAAGAAAAAAAATDesign primers
4363777TTCTTCTTCAGCTTTTTTCTTTTCTTCCTCAGCCTTTAACTTCTCTTCTTCAGCTTTTTGCTTDesign primers
4499796TTATCTTTATCCTTATTTTTATCADesign primers
4501129TATTATATTTTAATATATAATATAADesign primers
4517522CCGGTTGCTCCCGTTGGACCCGTTGCTCCTGTTGGGCCTGTTGCTCCTGTTGAADesign primers
4517648CCTGTTATT-CCTGTTATT-CCTGTTACTDesign primers
4536093ATCTTGGTTGTCGTTTCCACCTTGGTTGTTATTTCCGCCTTGGTTGTCGTTTCCDesign primers
4536549TTCATCTGGTTTTTC-TGCTTCCGGTTTTTC-TACTTCTGGTTTTTC-TGCTTCTGGTTTTTC-TACTTCCGGTTTTTC-TACTTCTGGTTTTTC-TACTTCTGGTTTTTC-TACTTCTGGTTTTTC-TGCTTCCGGTTTTTC-TACTTCTGGTTTTTC-TGCTTCCGGTTTTTCDesign primers
4717702GCTGCTCCTGCTGCTGCCCCTGCTDesign primers
4717813TGACCGTGT-TGACCGTGT-TGACTGTGT-TGACTGTGTDesign primers
4796566TTCTCTTTTTCTCTTCTTCACTTTDesign primers
4899069CTTCTGGTT-CTTTCGGAT-CTTTCGGTT-CTTTCGGTT-CTTTCGGTT-CTTTCGGTT-CTTTCGGTT-CTTTCGGATDesign primers
4899158GGTTCTTTC-GGTTCTTTC-GGATCTTTC-GGTTCTTTCDesign primers
4924860TAACCAATCAACCAATTCACCAATDesign primers
5100233TGCGGA-TGCGGA-TGTGGA-TGCGGA-TGTGGA-TGCAGA-TGCGGADesign primers
5162648TTTAGGTGCTTCTTTCTTAGGCTCTTCTTTTTTTGGTTCCTCTTTTTTAGGTTCTTCTTTTTTAGGCTCTTCTTTDesign primers
5167137TTCAAATTCAAGTTCTAATTCTAADesign primers
5181993ACAAGACAAACAAGATAAACAGGACAADesign primers
5270925TTCTTTTCTATACTTTTGTTTTGTTDesign primers
5324884TTC-TTC-CTC-TTC-TTC-TTC-TTC-TTCDesign primers
5358156GAGAATAGAAGAATAGGAGAATAGDesign primers
5406402TTTCT-TTTCT-TTTAT-ATTCT-TTTCCDesign primers
5456798ATTTTATTCTATATTATTTTCTTTTDesign primers

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