Microsatellites /Tandem Repeats database

Genome: Xanthomonas axonopodis Xac29-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11189CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
95517CATCTA-CATCTA-CATCTA-CATCTA-CATCTA-CATCTADesign primers
104798CGCCAA-CGCCAA-CGCCAA-CGCCAADesign primers
105601GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCADesign primers
242954CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCCDesign primers
243046CATTCCC-CATTCCC-CATTCCC-CATTCCC-CATTCCCDesign primers
330174ACACCG-ACACCG-ACACCG-ACACCG-ACACCG-ACACCGDesign primers
397612ACAGCGACG-ACAGCGACG-ACAGCGACGDesign primers
538030AATCCCG-AATCCCG-AATCCCG-AATCCCG-AATCCCGDesign primers
566818GAATCGG-GAATCGG-GAATCGG-GAATCGG-GAATCGG-GAATCGGDesign primers
594546GCGAGCG-GCGAGCG-GCGAGCG-GCGAGCGDesign primers
601597CCGCAGC-CCGCAGC-CCGCAGC-CCGCAGC-CCGCAGCDesign primers
618530ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCADesign primers
618583CAGCA-CAGCA-CAGCA-CAGCA-CAGCADesign primers
767581ACTGCC-ACTGCC-ACTGCC-ACTGCCDesign primers
774762ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
780359GCAACA-GCAACA-GCAACA-GCAACA-GCAACADesign primers
780768CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
820119GCCAACA-GCCAACA-GCCAACA-GCCAACADesign primers
820170CAACAGC-CAACAGC-CAACAGC-CAACAGC-CAACAGCDesign primers
873244CCGCCA-CCGCCA-CCGCCA-CCGCCADesign primers
875991ACCGCC-ACCGCC-ACCGCC-ACCGCC-ACCGCCDesign primers
876376CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
876401CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGCDesign primers
904217CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
1014647TGCATC-TGCATC-TGCATC-TGCATCDesign primers
1069759TTTCCGA-TTTCCGA-TTTCCGA-TTTCCGA-TTTCCGADesign primers
1104659CCACGCCGG-CCACGCCGG-CCACGCCGGDesign primers
1202155ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
1445048CCCGAAT-CCCGAAT-CCCGAAT-CCCGAAT-CCCGAAT-CCCGAAT-CCCGAAT-CCCGAAT-CCCGAAT-CCCGAAT-CCCGAAT-CCCGAATDesign primers
1445133CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
1463470CGCGGCGCCA-CGCGGCGCCA-CGCGGCGCCADesign primers
1480655TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
1494958CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
1538846ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
1554760CGGGCG-CGGGCG-CGGGCG-CGGGCGDesign primers
1593584GCTGACGT-GCTGACGT-GCTGACGTDesign primers
1597716GCGTCACT-GCGTCACT-GCGTCACTDesign primers
1641755CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
1653293ACCGCTGCA-ACCGCTGCA-ACCGCTGCADesign primers
1704151CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCATDesign primers
1725524TCGCCTCCA-TCGCCTCCA-TCGCCTCCA-TCGCCTCCADesign primers
1821047CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
1888478TTCCCGG-TTCCCGG-TTCCCGG-TTCCCGG-TTCCCGGDesign primers
1888514TCCCGAA-TCCCGAA-TCCCGAA-TCCCGAA-TCCCGAADesign primers
1899131CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAG-CACCAGDesign primers
2258201CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
2267744CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
2281656TTGACC-TTGACC-TTGACC-TTGACCDesign primers
2287885GCTGTC-GCTGTC-GCTGTC-GCTGTC-GCTGTC-GCTGTC-GCTGTCDesign primers
2332546CCGCTTC-CCGCTTC-CCGCTTC-CCGCTTCDesign primers
2332585TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGADesign primers
2332620TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGADesign primers
2489848CGACAC-CGACAC-CGACAC-CGACACDesign primers
3048461TGCCGG-TGCCGG-TGCCGG-TGCCGGDesign primers
3117514GGCGGCGGT-GGCGGCGGT-GGCGGCGGTDesign primers
3365654CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATT-CGGGATTDesign primers
3370359ACC-ACC-TCC-ACC-ACC-TCC-ACC-ACC-TCCDesign primers
3457588ATTGCC-ATTGCC-ATTGCC-ATTGCC-ATTGCC-ATTGCCDesign primers
3480336GGGATTC-GGGATTC-GGGATTC-GGGATTCDesign primers
3583103CGTGCTGT-CGTGCTGT-CGTGCTGTDesign primers
3661258TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
3822951GGGTCCCCAAGCTGTTCC-GGGTCCCCAAGCTGTTCC-GGGTCCCCAAGCTGTTCC-GGGTCCCCAAGCTGTTCC-GGGTCCCCAAGCTGTTCCDesign primers
3929216CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
3974585ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGCDesign primers
4001441GGGATCGCTGGC-GGGATCGCTGGC-GGGATCGCTGGC-GGGATCGCTGGCDesign primers
4112162GCATC-GCATC-GCATC-GCATC-GCATCDesign primers
4130149CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
4214658ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
4375364CGGGATT-CGGGATT-CGGGATT-CGGGATTDesign primers
4375393GCGGTTG-GCGGTTG-GCGGTTG-GCGGTTG-GCGGTTG-GCGGTTG-GCGGTTGDesign primers
4437221CGCAGG-CGCAGG-CGCAGG-CGCAGGDesign primers
4502925GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGTDesign primers
4512801CCAGAA-CCAGAA-CCAGAA-CCAGAADesign primers
4631261TGCCGG-TGCCGG-TGCCGG-TGCCGG-TGCCGGDesign primers
4727731TGCGTTGTGGCGATGG-TGCGTTGTGGCGATGG-TGCGTTGTGGCGATGG-TGCGTTGTGGCGATGGDesign primers
4735244GTCATG-GTCATG-GTCATG-GTCATG-GTCATGDesign primers
4798525GATTGGG-GATTGGG-GATTGGG-GATTGGG-GATTGGG-GATTGGGDesign primers
4873325GCGGAT-GCGGAT-GCGGAT-GCGGAT-GCGGATDesign primers
4922087CGTTGTG-CGTTGTG-CGTTGTG-CGTTGTG-CGTTGTG-CGTTGTG-CGTTGTG-CGTTGTGDesign primers
5060001GGGATTG-GGGATTG-GGGATTG-GGGATTG-GGGATTG-GGGATTG-GGGATTGDesign primers
5065293TTGCTG-TTGCTG-TTGCTG-TTGCTGDesign primers

Please help us improve this resource by reporting problems, suggestions etc.