Microsatellites /Tandem Repeats database

Genome: Xanthomonas axonopodis Xac29-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11186CCC-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
19420CGATTCCCCATTCCCGATTCCCTATTCCDesign primers
85065GGACCTGCCGGACCTGCTGCACCTGCCDesign primers
95514TTGCAT-CTACAT-CTACAT-CTACAT-CTACAT-CTACATDesign primers
104797GCGCCA-ACGCCA-ACGCCA-ACGCCADesign primers
105596TCATTGGC-ACGCAGGC-ACGCAGGC-ACGCAGGC-ACGCAGGC-ACGCAGGC-ACGCAGGC-ACGCAGGC-ACGCAGGC-ACGCAGGC-ACGCAGGC-ACGCAGGCDesign primers
161524GGCAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
242949TCTTGCG-CTTCCCG-CTTCCCG-CTTCCCG-CTTCCCG-CTTCCCG-CTTCCCG-CTTCCCG-CTTCCCG-CTTCCCG-CTTCCCG-CTTCCCGDesign primers
243034TTCCCGC-TTCCCCA-TTCCCCA-TTCCCCA-TTCCCCA-TTCCCCADesign primers
278530AAACCCAAGCCCAAGCCCAAACACDesign primers
294021CGCCGGCGGGAGAGGGGCTCAAGCGCGTGGGCGGGAGAGGGGCTCGAGTGCGTGGACGGGAGAGGGGCTCGAGTGCGCGGGCGGGAGAGGCGCTCGAGCGDesign primers
294294CACACCCACACTCGCACCCACACCDesign primers
330171TCCACA-CCGACA-CCGACA-CCGACA-CCGACA-CCGACADesign primers
387525CCGATTCCCCATTCCCAATTCCCCATTCDesign primers
397609ACAACAGCGACGACAGCGACGACAGCGDesign primers
538027GCCAATC-CCGAATC-CCGAATC-CCGAATC-CCGAATC-CCGAATCDesign primers
566815TGAGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
594545CGCGAGC-GGCGAGC-GGCGAGC-GGCGAGCDesign primers
601596GCCGCAG-CCCGCAG-CCCGCAG-CCCGCAG-CCCGCAGDesign primers
603922CCGGCGCCGCCGCGGGCGCAGGCGDesign primers
618526ATCGAC-ACCAAC-ACCAAC-ACCAAC-ACCAAC-ACCAAC-ACCAAC-ACCAACDesign primers
618581CGCAG-CACAG-CACAG-CACAG-CACAGDesign primers
629361GTCGGCGTAGGCGCCGGCGTTGGCDesign primers
633479CGGGAATCGGGAGTTGGGAATCGGGAATDesign primers
635215GGTGGCATGGGCGGCATGGGCGGCATGDesign primers
643089CCGATTC-CCAATTC-CCAATTC-CCAATTCDesign primers
700954TGCCTATGCCGATGACTATGCCTATGCCGADesign primers
707605CGGCCATCGCGGCTATCGCGGCTATCGDesign primers
730706CCCGCATCGCACGCATCGCACGCATCGDesign primers
761278CCTGTCGCTGTCCCTGGCCGTGTCDesign primers
765746CACCTGCCGCTGCGCCCGCCGCTGCACCCGCCGCCGDesign primers
767580GACTGC-CACTGC-CACTGC-CACTGCDesign primers
774705CGGGAATGGGGAATCGGGAATGGGGAATDesign primers
774760CCATTCCCGATTCCCGATTCCCGATTCCCGATTCCCCATTCADesign primers
779432CCCGATTCCCCATTCCCGACTCCCCATTDesign primers
780325GGAATGG-GGAATCG-GGAATTG-GGAATTG-GGAATGGDesign primers
780361AACAGC-AACAGC-AACAGC-AACAGC-AACAGCDesign primers
780767ACGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
790778GCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
820076GGATAAC-GGCCAAC-GGCCAAC-GGCCAAC-AGCCAAC-AGCCAAC-GGCCAAC-AGCCAAC-AGCCAAC-AGCCAAC-AGCCAAC-GGCCAAC-GGCCAAC-GGCCAAC-AGCCAACDesign primers
850696CTCGGCCGCGGCCTGGGCCTGGGCDesign primers
859124GG-CG-CG-GA-CG-CG-GG-CG-TG-CG-CG-CGDesign primers
873242CCCCGC-CACCGC-CACCGC-CACCGC-CACCGCDesign primers
875990AACCGC-CACCGC-CACCGC-CACCGC-CACCGCDesign primers
876374CTC-CGC-CGC-CGC-CGC-CGC-CGC-CGCDesign primers
876399GCCACC-GCCACC-GCCACC-GCCACC-GCCACC-GCCACC-GCCACCDesign primers
894531ATTCCCGATTCCCTTTTCCCGATTCCCGDesign primers
904216GCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
919556TGGGGAA-TGGGGAA-TCGGGAA-TGGGCAADesign primers
919603TCCCGATTCCCGACTGCCGATTCCCCATDesign primers
930950CGGGAAT-CGTGAAT-CGTGAAT-CGGGAATDesign primers
931007CGATTCCCTATTCCCGACTCCCAATTCCDesign primers
933361CCGATTCCCCATTCCCGATTCCCCATTCDesign primers
1004890GCGGCGGCGGCTGGGGCGGTGGCGDesign primers
1014646GTGCAT-CTGCAT-CTGCAT-CTGCATDesign primers
1018081TGGGCATGCGATGGGCAGGCAATGGGCCTGCAATGGGCGTGCGGDesign primers
1051193GGCGCCTGT-TGCGCCTGT-TGCGCCTGTDesign primers
1069758TTTTCCG-ATTTCCG-ATTTCCG-ATTTCCG-ATTTCCGDesign primers
1104653CGCCGACCACGCCGGCCACGCCGGCCADesign primers
1118348CCATTCTCCATTCCCGATTCTCCATTCADesign primers
1124200CGAATCCCGAATCACCAATCCCGAATACDesign primers
1180285GGCGCTGGCGCGCGCGCTGGCGATDesign primers
1196710CCGACG-CCGACG-CGGACG-CGGACGDesign primers
1198153ACGGCTACCGCTACGGCAACAGCTDesign primers
1202153CTATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
1408354GGC-GGC-GGT-GGC-GGT-GGC-GGT-GGCDesign primers
1445044ATTGCCC-GAATCCC-GAATCCC-GAATCCC-GAATCCC-GAATCCC-GAATCCC-GAATCCC-GAATCCC-GAATCCC-GAATCCC-GAATCCCDesign primers
1445129AATCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
1463467GCGCGCGGCG-CCACGCGGCG-CCACGCGGCG-CCACGCGGCGDesign primers
1480652GAGTCGG-GAATCGG-GAATCGG-GAATCGG-GAATCGGDesign primers
1494955TTACGAT-TCCCGAT-TCCCGAT-TCCCGAT-TCCCGAT-TCCCGATDesign primers
1527946GTTGTGCGGCGATGTGCTGCGCGGTGCGGCDesign primers
1531556GCTTCGGCTTCCGCTGCGGCTTCTDesign primers
1535233CCGGGAC-CCGGGAC-CCGGGTC-CCGGGTCDesign primers
1538843GCCATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
1554759TCGGGC-GCGGGC-GCGGGC-GCGGGCDesign primers
1559059GTG-GCG-GCG-GCG-GTG-GCG-GGG-GCGDesign primers
1593582GCGCTGAC-GTGCTGAC-GTGCTGAC-GTGCTGACDesign primers
1597714CAGCGTCACTGCGTCACTGCGTCADesign primers
1614047GGAGTCGGGAATCGGGAGTCGGGAATCGDesign primers
1620970GGAATCGGGAATGGAGAATCGGGAATCADesign primers
1625550CGGGAAT-CGGGAAT-GGGGAAT-GGGGAATDesign primers
1625656CGATTCCCGATTCTCCATTCCCGATTCGDesign primers
1626843CGGGAATCGGGAGTGGGGAATCGGGAATDesign primers
1626924CGATTCCCGACTCCCGATTCCCAATTCCDesign primers
1636963ATTCCCGATTCCCCAATCCCGATTCCCADesign primers
1641754GCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
1653287GCTGCCACCGCTGCAACCGCTGCAACCDesign primers
1688884GCCAGCGCCAGTTCCAGCGCCAGCDesign primers
1704148CTCCGG-CATCGG-CATCGG-CATCGG-CATCGG-CATCGGDesign primers
1725522CGTCGCCTC-CATCGCCTC-CATCGCCTC-CATCGCCTCDesign primers
1761790ATATCTTTGGCGATATCTTCGGCAATATTTTCGGCGDesign primers
1774746ATTCCCGATTCCCCACTCCCGATTCCCGDesign primers
1776225CGGGAATGGGGAATAGGGAATGGGGAATDesign primers
1818311GCGGCA-GTGGCA-GTGGCA-GCGGCA-GGGGCADesign primers
1821046GCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
1847255CGAGCGCGAACGCGCGCGCGAGCCDesign primers
1888476CTTTCCC-GGTTCCC-GGTTCCC-GGTTCCC-GGTTCCC-GGTTCCCDesign primers
1888519AATCCCG-AATCCCG-AATCCCG-AATCCCGDesign primers
1899127TGCACA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCA-CCAGCADesign primers
1933690GCATG-GCACG-GCACG-GCACG-GCACGDesign primers
2071266CACGCTCG-CACGCTCG-CACGCGCGDesign primers
2120802GCGGCCGGTGCGGCCAGTGCGGCCGATDesign primers
2140986AGGGATTAGCGATTCGGGATTCGGGATTDesign primers
2258200ACGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
2267740TTGACGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGADesign primers
2267800CCCAATC-CCGAATC-CCGAATC-CCGAATCDesign primers
2281654CGTTGA-CCTTGA-CCTTGA-CCTTGADesign primers
2287882CTGGCT-GTCGCT-GTCGCT-GTCGCT-GTCGCT-GTCGCT-GTCGCT-GTCGCTDesign primers
2328167GGGAATCGGGAATGGAGAATCGGGAATCDesign primers
2332545ACCGCTT-CCCGCTT-CCCGCTT-CCCGCTTDesign primers
2332574CCGATTC-CCGCTTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGCTTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
2333872GCGCTGCAA-GCGCTGCAA-GCGCTGGAADesign primers
2417967TGGCAACGTCGCAACGTGGCAACCDesign primers
2489847TCGACA-CCGACA-CCGACA-CCGACADesign primers
2514828GCGGCGGCGGTGGCGGTGGCGGCADesign primers
2604962GCGCGTGCGCCTGGGCGTGCGCGCDesign primers
2607780CCGGCACCGGTAACGGCACCGGCGDesign primers
2647754AGTCGCAGCAGTTGCAGCAGTTGCAGCDesign primers
2649292GGCGGTGGTGGTGGTGGTGGCGGADesign primers
2672578GCACGGGACGGGACGGCCCGGCACCDesign primers
2674285GCCCGCGACCGAGCACTCGACCGAGCCCGCGCCCGTDesign primers
2676444GCCCCAGATGCCCCGGATGCCCCGGATDesign primers
2770346GGCCTTCTTCGCAGGCGCCTTTTTCGCGGGTGCCTTCTTGGCAGCDesign primers
2801253GGGAATCGGGAATGGTGAATCGGGAATGDesign primers
2801301ATTCCCGATTCCCCACTCCCGATTCCCGDesign primers
2858212CCATCGATCCGTCGATTCATCGATDesign primers
2947348CCTCCACCACCACCTCCTCCTCCCDesign primers
2958617GGGAATGGGGAGTGGGGAGTGGGGAATCGGGAATGDesign primers
2958699CGATTCCCCATTCCCGAGTCCCGATTCCDesign primers
3048460CTGCCG-GTGCCG-GTGCCG-GTGCCGDesign primers
3066866GAATCGGGAATGGGGAATGGGGAATCGCDesign primers
3114385TCAAAGGTAATTAAAGGGTAATTGAGAGGTAATDesign primers
3117504TGGCGG-TGGCGG-CGGCGG-TGGCGGDesign primers
3117529GGT-GGC-GGC-GGT-GGA-GGC-GGT-GGA-GGC-GGC-GGC-GGCDesign primers
3154498CGCCGCCGCCGACGGCGCCGCTGCDesign primers
3216637GAATGGCGGAATGGCAGATTGGCGGATTGGCGDesign primers
3261397TGGGAAT-GGGGAAT-GGGGAAT-AGGGAATDesign primers
3261525CCCATTCCCCACTCCCCATTCTCCATTCDesign primers
3272449GGGAATC-GGGATTC-GGGATTC-GGGAATCDesign primers
3272802GGGAATC-GGGATTC-GGGATTC-GGGAATCDesign primers
3276631GGCGCT-GGCCCT-GGCCCT-TGCGCTDesign primers
3286017GTGCCGTTGCCGGTGCGGGTGCCGDesign primers
3365649GTTGCCG-GGATTCG-GGATTCG-GGATTCG-GGATTCG-GGATTCG-GGATTCG-GGATTCG-GGATTCG-GGATTCG-GGATTCG-GGATTCGDesign primers
3365734GATTCGGGATTTGGGATTTGGGATTTGGGATTTGGGATTCGTDesign primers
3370358AACCACCTCCACCACCTCCACCACCTCDesign primers
3370386ACCTCCGCCACCTCC-ACCTCCGCCACCTCC-ACCCCCTCCACCCCCDesign primers
3432863CGATTCCCCATTCCCGATTCGCTATTCCDesign primers
3446173CCCCATTCCGCATTCCCCATTCCCGATTDesign primers
3457586TTATTG-CCATTG-CCATTG-CCATTG-CCATTG-CCATTGDesign primers
3457685CTGGTG-CGGGTG-CGGGTG-CGGGTGDesign primers
3480335TGGGATT-CGGGATT-CGGGATT-CGGGATTDesign primers
3529178CTGCACCTGCTGCTCCTGCTGCACCTGDesign primers
3583101GGCGTGCTGTCGTGCTGTCGTGCTDesign primers
3583497GGCAGGCTTCTTGGTAGCGGTCTTCTTGGTGGCGGACTTCTTGGTDesign primers
3610040CAGCGGCAGCGTCACCGGTAGCGGDesign primers
3661256CTTCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGGDesign primers
3699381GGGATTG-GGGATTG-GGGAATG-GGGATTCDesign primers
3703554GATTCCC-GATTCCC-GATTGCC-GATTCCC-GATTCTCDesign primers
3704206TCGATTCCCGATTCTCCATTCCCGATTCDesign primers
3708952GGCGGCGGCAGCGGCCGCGGCGACDesign primers
3751091GCGCGCCT-GCGCGCCT-GCGCGCGTDesign primers
3822793GGGAGTCGGGAGTGGGGAATCGGGAATCDesign primers
3822947GTATGGGTCCCCAAGCTG-TTCCGGGTCCCCAAGCTG-TTCCGGGTCCCCAAGCTG-TTCCGGGTCCCCAAGCTG-TTCCGGGTCCCCAAGCTGDesign primers
3889425CGGGATT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
3920475GGA-GGT-GGT-GGT-GGA-GGC-GGC-GGTDesign primers
3924979CACCACCAGCACCAGCACCACCGCDesign primers
3929215CCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
3932343CGATTCCCCATTCCCGATTCTCGATTCTDesign primers
3974577ACCGCG-GTATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCG-GCATCGDesign primers
3990579CGCCAGCGCCGGCGCCACCACCAGDesign primers
4001323GGGATTCGGGAATCGGGATTGGGGAATCDesign primers
4001435GCGGGGGGGATC-GCTGGCGGGATC-GCTGGCGGGATC-GCTGGCGGGATC-GCTGGCGGGATCDesign primers
4011694CGATTCCCCATTCCCGATTGCCTATTCCDesign primers
4048679TGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
4048772CGATTCCCCATTCCCGATTCCCAATTCCDesign primers
4086488CCGGCTGCTG-CCGGCTGCTG-TCGGCAGCTGDesign primers
4088530CCGCCGCAGCCGCCGCCATCGCCGDesign primers
4112160CGGCA-TCGCA-TCGCA-TCGCA-TCGCA-TCGCADesign primers
4118557CGACG-TGACG-CGACG-CGACA-CCACGDesign primers
4127969CGGGAATGGGGAATCGGGAGTGGGGAATDesign primers
4130144GAGGCCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCGDesign primers
4196004TGGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
4214656CCATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
4215331CGATTCCCGACTCCCGATTCCCGATTCCDesign primers
4217071CGGCGGAACGGCGAAAGGGCGGAADesign primers
4219725GCGCCATCGCGCCAACGCGCCAGCDesign primers
4222997CCACCACCACCGGCACCACCAGCADesign primers
4225707GAATCGGGAATGGGGAATGGGGAATCGADesign primers
4225785CCCATTC-CCTATTC-CCTATTC-CCTATTCDesign primers
4338439ATTCCCTATTCTCTATTCCCGATTCCCGDesign primers
4354461CAGCACCTGCACCAGCACCAGCAADesign primers
4356193GGGATTCGGGAGTCGGGATTGGGGATTCDesign primers
4356324CGAATCCCCAATCCCCAATCCCGAATTCDesign primers
4375363CCGGGAT-TCGGGAT-TCGGGAT-TCGGGATDesign primers
4375392GGCGGTT-GGCGGTT-GGCGGTT-GGCGGTT-GGCGGTT-GGCGGTT-GGCGGTTDesign primers
4437220ACGCAG-GCGCAG-GCGCAG-GCGCAGDesign primers
4457543TGTCGTGCGCAGTGTCGCGCGCGGTGTCGTGCACACDesign primers
4479545CCAATCCCGAATCCCCAATCCCCAATCCDesign primers
4502922GAAGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTCDesign primers
4512800GCCAGA-ACCAGA-ACCAGA-ACCAGADesign primers
4512858CGGTCA-GGGTCA-GGGTCA-GGGTCADesign primers
4514597CGGCT-CGGCT-GGGCT-GGGCT-GGGCTDesign primers
4561878GGGAATCGGGAGTCGGGAATAGGGAATTDesign primers
4561977ATTCCCGATTCCCCACTCCCGATTCCTGDesign primers
4577908GCTGGCGCCGCAGGCGCCGCAGGCGCCDesign primers
4596574CCATTCCCGATTCCCCATTCCCCATACCDesign primers
4631260ATGCCG-GTGCCG-GTGCCG-GTGCCG-GTGCCGDesign primers
4727726GCTTTTGCGTTGTGGC-GATGGTGCGTTGTGGC-GATGGTGCGTTGTGGC-GATGGTGCGTTGTGGCDesign primers
4735241ACAGTC-ATGGTC-ATGGTC-ATGGTC-ATGGTC-ATGGTCDesign primers
4798520CTGGTGA-TTGGGGA-TTGGGGA-TTGGGGA-TTGGGGA-TTGGGGADesign primers
4812462CCGTGC-CAGTGC-CAGTGC-CAGTGCDesign primers
4835565CTCGGG-CTCGGG-CTCGCG-CTCGTGDesign primers
4863573CCAGCCGCACCTGCCGCAACAGCCGCADesign primers
4871572TAGCTG-TGGCTG-TGGCTG-TAGCTG-TGGCTGDesign primers
4873321GGGCGC-GGATGC-GGATGC-GGATGC-GGATGC-GGATGCDesign primers
4895061ATTCCCGATTCCCCACTCCCGATTCCCGATTCCCGDesign primers
4922079GCCTAGG-CCGTTGT-GCGTTGT-GCGTTGT-GCGTTGT-GCGTTGT-GCGTTGT-GCGTTGT-GCGTTGTDesign primers
4936117GCGCTGCAA-GCGCTGCAA-GCGCTGGAADesign primers
5059999ATGGGAT-TGGGGAT-TGGGGAT-TGGGGAT-TGGGGAT-TGGGGATDesign primers
5065292TTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCTDesign primers

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