Microsatellites /Tandem Repeats database

Genome: Xanthomonas citri subsp. citri Aw12879

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11193CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
123626ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACADesign primers
171944CCGCAT-CCGCAT-CCGCAT-CCGCATDesign primers
246727AATCCCC-AATCCCC-AATCCCC-AATCCCCDesign primers
308746ATGACC-ATGACC-ATGACC-ATGACC-ATGACC-ATGACC-ATGACC-ATGACCDesign primers
316278GCACCATCGCCACAAC-GCACCATCGCCACAAC-GCACCATCGCCACAAC-GCACCATCGCCACAAC-GCACCATCGCCACAAC-GCACCATCGCCACAAC-GCACCATCGCCACAACDesign primers
412841GCACCG-GCACCG-GCACCG-GCACCG-GCACCGDesign primers
556959CATCTA-CATCTA-CATCTA-CATCTA-CATCTA-CATCTA-CATCTA-CATCTA-CATCTADesign primers
566258CGCCAA-CGCCAA-CGCCAA-CGCCAADesign primers
567061GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCA-GGCACGCADesign primers
703309CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCC-CGCTTCCDesign primers
754607CACGC-CACGC-CACGC-CACGC-CACGCDesign primers
791801ACACCG-ACACCG-ACACCG-ACACCGDesign primers
859006ACAGCGACG-ACAGCGACG-ACAGCGACGDesign primers
1028153GAATCGG-GAATCGG-GAATCGG-GAATCGGDesign primers
1054507GCGAGCG-GCGAGCG-GCGAGCG-GCGAGCGDesign primers
1078479ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCA-ACACCADesign primers
1078628CAGCA-CAGCA-CAGCA-CAGCA-CAGCA-CAGCA-CAGCA-CAGCADesign primers
1103151ATTCCCA-ATTCCCA-ATTCCCA-ATTCCCADesign primers
1253811GACCCGGAACAGCTTGGG-GACCCGGAACAGCTTGGG-GACCCGGAACAGCTTGGGDesign primers
1277204TGCCGGGAAAAT-TGCCGGGAAAAT-TGCCGGGAAAATDesign primers
1471789GGTGGAGGT-GGTGGAGGT-GGTGGAGGT-GGTGGAGGTDesign primers
2048628CGGGAAG-CGGGAAG-CGGGAAG-CGGGAAG-CGGGAAG-CGGGAAG-CGGGAAG-CGGGAAGDesign primers
2093302CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGA-CAGCGADesign primers
2113452GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTCDesign primers
2113562AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGGDesign primers
2121734GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
2215828CAGCGGCTCGGT-CAGCGGCTCGGT-CAGCGGCTCGGTDesign primers
2513072TGCCGG-TGCCGG-TGCCGG-TGCCGG-TGCCGGDesign primers
2751167GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
2936111TCTAGGCCGATGCGACGG-TCTAGGCCGATGCGACGG-TCTAGGCCGATGCGACGGDesign primers
3005469GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGTDesign primers
3080968GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
3175383AGGCGATGG-AGGCGATGG-AGGCGATGGDesign primers
3196707ATGCCG-ATGCCG-ATGCCG-ATGCCG-ATGCCG-ATGCCGDesign primers
3213780ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
3248176GTTGCAGCG-GTTGCAGCG-GTTGCAGCG-GTTGCAGCG-GTTGCAGCGDesign primers
3259733CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
3303777AGTGACGC-AGTGACGC-AGTGACGC-AGTGACGCDesign primers
3307910CGTCAGCA-CGTCAGCA-CGTCAGCADesign primers
3346738CGCGCC-CGCGCC-CGCGCC-CGCGCCDesign primers
3362636GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
3406514GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
3420828CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
3438076GGCGCCGCGT-GGCGCCGCGT-GGCGCCGCGTDesign primers
3456369GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCGDesign primers
3456426GATTCGG-GATTCGG-GATTCGG-GATTCGGDesign primers
3495225AGCAGCGTC-AGCAGCGTC-AGCAGCGTCDesign primers
3600792ATTGCC-ATTGCC-ATTGCC-ATTGCC-ATTGCC-ATTGCCDesign primers
3667474CCTGCCACTG-CCTGCCACTG-CCTGCCACTG-CCTGCCACTGDesign primers
3726229CGTGCTGT-CGTGCTGT-CGTGCTGTDesign primers
3732329GCGACGTAA-GCGACGTAA-GCGACGTAADesign primers
3804406TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
3950138ACGGGCA-ACGGGCA-ACGGGCA-ACGGGCADesign primers
3970911CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
4158192TGCAGA-TGCAGA-TGCAGA-TGCAGA-TGCAGADesign primers
4217114TCGCCG-TCGCCG-TCGCCG-TCGCCGDesign primers
4297182GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
4297237GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCGDesign primers
4297626GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
4300380GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
4352310GCTGTTG-GCTGTTG-GCTGTTG-GCTGTTGDesign primers
4352348GTTGGCT-GTTGGCT-GTTGGCT-GTTGGCTDesign primers
4352377TTGGCCG-TTGGCCG-TTGGCCG-TTGGCCGDesign primers
4352418GTTGGCC-GTTGGCC-GTTGGCC-GTTGGCC-GTTGGCC-GTTGGCCDesign primers
4352467GTTGGCC-GTTGGCC-GTTGGCC-GTTGGCC-GTTGGCC-GTTGGCCDesign primers
4352551GTTGGCC-GTTGGCC-GTTGGCC-GTTGGCCDesign primers
4391350CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
4391754GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCTDesign primers
4404603GTGGCA-GTGGCA-GTGGCA-GTGGCA-GTGGCA-GTGGCADesign primers
4507374CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
4551958ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGCDesign primers
4626032GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
4689520GCATC-GCATC-GCATC-GCATC-GCATCDesign primers
4707505CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
4792031ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
4803161ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCTDesign primers
4953114GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTCDesign primers
4953202TTGGCGG-TTGGCGG-TTGGCGG-TTGGCGG-TTGGCGGDesign primers
5023466ACCGGC-ACCGGC-ACCGGC-ACCGGCDesign primers
5052808GGC-GGC-GGC-GGC-GGC-GGC-GGC-GGCDesign primers
5080017CGACGG-CGACGG-CGACGG-CGACGG-CGACGG-CGACGGDesign primers
5116949GCTGATG-GCTGATG-GCTGATG-GCTGATGDesign primers
5128179GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGTDesign primers
5138109CCAGAA-CCAGAA-CCAGAA-CCAGAADesign primers
5226262GGGATTG-GGGATTG-GGGATTG-GGGATTGDesign primers
5231533TTGCTG-TTGCTG-TTGCTG-TTGCTG-TTGCTG-TTGCTG-TTGCTG-TTGCTGDesign primers

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