Microsatellites /Tandem Repeats database

Genome: Polaribacter sp. MED152

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
22302AGATACAGCAACAGCTACAGTAACAGTTACAGTAACDesign primers
47820GATGGGAAATT-TGTGGGAAATT-TGTGGGAAATTDesign primers
105259ATTTT-ATTTT-ATGTT-ATTCT-ATTTTDesign primers
233852TCCAATTCCTATTTCAATTCCAATDesign primers
250608TTGATG-TTGATG-ATGATG-GTGATGDesign primers
489889TACAGTTACTGTTACAGTTGCAGTDesign primers
506392TTTGAATTTAAATTAGAATTTGAADesign primers
594571AAAAAGAAAACAAGAAAAGAAGAADesign primers
598975ATTGGAATGGGAATAGGAATTGGADesign primers
635355AATGCTAAAAATGCTAACATTGCTAAADesign primers
758997CGAATT-CAAATT-CAAATT-TGAATTDesign primers
838800AAATAACAATTGTATTAACAATTGTATTAACAATTGDesign primers
838940AAATTGTTTTCAGAAATTTTGTTTACAGAAAAAGAATTTTCAGAADesign primers
1071664CCTGCT-GCTGGT-CCTGCT-ACTGCT-ACTGCT-GCTGCTDesign primers
1208996ATTGAAGAATTTGAAGAAATTGAAAAADesign primers
1253349CCATTCCCATAGCCATAACCATAGCCATAACCATAGDesign primers
1279405ATTTGT-CTTTGT-CTTTGT-CTTTGTDesign primers
1279807CTTCGT-CTTCGT-CTTTGT-CTTTGTDesign primers
1290161TGGTTTAGGTTTGGGTTTTGGTATDesign primers
1329729TCTTTAT-TCTTTAT-TCTTTTT-TCTTTTTDesign primers
1469112ATTACCACTT-TTTACCACTT-TTTACCACATDesign primers
1503401TATTATTGTTATTATAATTATTATDesign primers
1524891GTTGAAGAAGCTGAAGAAGTTGTAGAADesign primers
1624091AGAAAAAAGAAGAAAGAAACAAGAAAAADesign primers
1661100CATCTGCATTTTCATCTTCTAAATTTTCATCTTCTAAATTTTCATDesign primers
1668435ACGTGTACGTTTTCGTGTACGTTTDesign primers
1791244AGATGCAGATTCAGATGGAGATGGDesign primers
1803409TACTGTTACTTTTATTGTTACTGCDesign primers
1842353GAAAAATGTAAAAATGGACAAATGDesign primers
1847407CATCTAAATCTAAATCTACATATADesign primers
2203103AAAACAATAAAAAACATTTAAAAAAAATTADesign primers
2207868AACCAATTTGGTTTACCAATTTGGTTGACCAAGTTGGTTDesign primers
2219198GAATAAAAATTAATTAAAATGAATAATAATDesign primers
2221270TCTATTATTT-ACTATTATTT-ATTATTATTTDesign primers
2230122TAGATTTTTTTTGATTTTCTGAAATTTTTTDesign primers
2240824TATTCTTTTATTTTTTTACTCTTTDesign primers
2376060TCTTTTTTTTTCTTTCTCTTTCATTTTTTGDesign primers
2441971GCT-GCA-ACT-GCA-GCA-GCA-GCA-GCADesign primers
2451517TT-TT-TA-TT-CT-TT-TA-TT-TT-TT-TC-TTDesign primers
2489012TTCGTAGTTGTAGTACCTCTTCTACTGGTGGTTGTTGTACCTCTTCTATTTGTAGTTGTAGTACCTCTTCTTDesign primers
2518773CC-CA-AG-AA-AA-AA-AC-AG-CA-AA-GA-AA-AA-AA-CG-AC-TA-AG-AG-AA-AA-AC-ADesign primers
2733534CCATCTCCATTTGCATCTCCATTTDesign primers
2744371GTTTGATTTTATCTTTGATTTTTTGTTTGATTAAATDesign primers

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