Microsatellites /Tandem Repeats database

Genome: Mannheimia haemolytica USDA-ARS-USMARC-183

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
13498TGAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAGDesign primers
66154TAAAATAGAATCAAATAAAATAAACDesign primers
85305CA-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-AC-ACDesign primers
85410CCAA-CAAC-CAAC-CAAC-CAAC-CAAC-CAAC-CAAC-CAACDesign primers
182444TTTGTGATTGTTTATGATTGGTTTTGATTGDesign primers
200917TCCGGTATTAAC-CTCGGTATTAAC-CTCGGTATTAACDesign primers
215234AGAGTTGGTA-GTAGTAAGTA-GTAGTAAGTA-GTAGTAAGTA-GTAGTTGGTA-GTAGTTGGTA-GTAGTTGGTA-GTAGTTGGTADesign primers
221987CAGCAGCGGCAGCAGTAGCAGCAGDesign primers
285589CAT-CAC-CAC-CAT-CGC-CAC-CAT-CAC-CACDesign primers
344769ATGGAAAAG-ATGGAAAAG-ATGGTAAAGDesign primers
345354ATACTGTTACTGAGACTGTTACTGDesign primers
648120TTGCTG-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGC-TGGAGCDesign primers
782497CTCTGCTTGAGGAGCATTTTCTACCTGAGGAGCATTTTGTGCCTGAGGAGCATTDesign primers
782554CACCTGAGGAGCATTTTG-TGCCTGAGGAGCATTTTG-TGCCTGAGGGGCATTTTGDesign primers
893060ATTATTATTTTTATAATTAGTATTATTATCDesign primers
905468TATTATTTTATTTTTTAATTATTTDesign primers
935419GAAAAAGCAGAAAAAGAAGCTAAAGCCAAGGCAGAAAAAGAAGCAAAAGAAAAGGCTGAGAAAGAAGCCAAAGCAAAAGCAGAAAAAGAAGCCAAAGAGAAAGCCGAGAAAGAAGCTAAADesign primers
937386GATGCAGCAGCA-AACGCAGCAGCA-AACGCAGCAGCA-AATGCAGCAGCADesign primers
963157ATCAC-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGT-GCTGTDesign primers
980998AAAACTTACAAGTAAACTTATAAGCTAACTTACAAGDesign primers
1036843GAAATAATTTCAAACAATTTAAAATAATTADesign primers
1102231TTAAGTCATTTAATTCATTTAATTCATDesign primers
1102674GCTGAGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGCDesign primers
1175756CCGGTCGTGCCGGTCGTTCAGGTCGTGDesign primers
1254714CACT-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
1359030TTGGC-AAGGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGCDesign primers
1404666TAATTGTATTACCAGTAATTGTCGTACCTGTAATTGTACCAGCAGDesign primers
1421797TCTGACCAG-TTTCGCCAG-TTTCGCCAG-TTTCGCCAG-TTTCGCCAG-TTTCGCCAG-TTTCGCCAG-TTTCGCCAGDesign primers
1451008CATACAATAACCGACAATAACAGATAATAADesign primers
1451106ATAATAAACGATAATAACCGACAAAAAACGDesign primers
1465056TCTTTTATAGTCTCTTATTGTCTTCTTTAGDesign primers
1473931AATTTTCCC-TATTTTCCC-TATTTTCCCDesign primers
1476352GAATTGTCCT-ATATTGTCCT-ATATTGTCCTDesign primers
1493205GTTTAAAACAGATTTAAAATAGTTTTAAAACCGDesign primers
1541874TGGAGCAGGAGCAGGAGCTGAAGCDesign primers
1568787ACGTACACCACCTGCAGAG-ACAAAAACCACCTGCAGAG-ACAAAAACCACCTGCAGAG-ACAAAAACCACCTGCAGAGDesign primers
1675117GTTAT-GTTTT-GTTTT-GTTTT-GTTTTDesign primers
1681757CA-CA-AA-CA-CA-AA-TA-CA-AA-CA-AA-AADesign primers
1828293TTTTTATTTTGATCTTTATTTTTGDesign primers
1885030AAATC-AAATC-CAATC-AAAAC-AAATCDesign primers
2032110CTGTATA-GTGAATA-GTGAATA-GTGAATA-GTGAATA-GTGAATADesign primers
2106934ACAA-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCTDesign primers
2125379CGTTTAAATGCGTTTAACAGCGTTTAAATTDesign primers
2287489ATACAACTCTATACAAATCTATACATTTCTDesign primers
2301641TATTTTATTAAATTTTATTGAATTTDesign primers
2382564CTTCTTCAGCCTTTTTAT-CCTCTTCAGTTTTTTTAT-CCTCTTCAGTTTTTTTAT-CCTCTTCAGTTTTTTTAT-CCTCTTCAGTTTTTTTATDesign primers
2447399TATTGGTT-GGTTGGTT-GATTGATT-GATTGATT-GATTGATT-GATTGATT-GATTGATT-GATTDesign primers
2542024CTGACTGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGT-TGGAATGGTDesign primers
2576675AAAATCTGCAAAACTTTGCAAAACTTTGCADesign primers
2577736AAGCTACAAAAAACAACAAAAAACAACAAADesign primers

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