Microsatellites /Tandem Repeats database

Genome: Streptomyces hygroscopicus subsp. jinggangensis TL01

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
558298CGGGGTGGA-CGGGGTGGA-CGGGGTGGADesign primers
605856TCGTCGTCC-TCGTCGTCC-TCGTCGTCCDesign primers
691969CGGTGAC-CGGTGAC-CGGTGAC-CGGTGAC-CGGTGACDesign primers
708984CGGCTGA-CGGCTGA-CGGCTGA-CGGCTGA-CGGCTGADesign primers
830039GGCGAGTAC-GGCGAGTAC-GGCGAGTACDesign primers
890226GGGCTGC-GGGCTGC-GGGCTGC-GGGCTGCDesign primers
973146AAGCGTCAAC-AAGCGTCAAC-AAGCGTCAACDesign primers
1040595CCGCCGGACGA-CCGCCGGACGA-CCGCCGGACGA-CCGCCGGACGADesign primers
1070022CGGCGCGGCC-CGGCGCGGCC-CGGCGCGGCC-CGGCGCGGCCDesign primers
1124434GGGCCGGGCA-GGGCCGGGCA-GGGCCGGGCADesign primers
1125087ACGGCTGCACGCGATGCGC-ACGGCTGCACGCGATGCGC-ACGGCTGCACGCGATGCGC-ACGGCTGCACGCGATGCGC-ACGGCTGCACGCGATGCGCDesign primers
1139670GGTGCT-GGTGCT-GGTGCT-GGTGCT-GGTGCTDesign primers
1197544CCAGCCGGA-CCAGCCGGA-CCAGCCGGA-CCAGCCGGA-CCAGCCGGA-CCAGCCGGA-CCAGCCGGADesign primers
1197838CGCCGTCGTCCG-CGCCGTCGTCCG-CGCCGTCGTCCGDesign primers
1432009CTCGCCGCC-CTCGCCGCC-CTCGCCGCCDesign primers
1623440CACCGC-CACCGC-CACCGC-CACCGCDesign primers
1790625GCACG-GCACG-GCACG-GCACG-GCACGDesign primers
2001471CCTGCCA-CCTGCCA-CCTGCCA-CCTGCCADesign primers
2175403CCGTCGTTC-CCGTCGTTC-CCGTCGTTCDesign primers
2189881TCGCCCTTC-TCGCCCTTC-TCGCCCTTCDesign primers
2304179TGAGGACTCCGCCT-TGAGGACTCCGCCT-TGAGGACTCCGCCTDesign primers
2316925GGCTCACCG-GGCTCACCG-GGCTCACCGDesign primers
2527059GTACCG-GTACCG-GTACCG-GTACCGDesign primers
2550776GCCGACGTC-GCCGACGTC-GCCGACGTCDesign primers
2604899GGCCAGGGC-GGCCAGGGC-GGCCAGGGCDesign primers
2625367GGCAGG-GGCAGG-GGCAGG-GGCAGGDesign primers
2740934CCCCGGTGT-CCCCGGTGT-CCCCGGTGTDesign primers
2906942TCCCGT-TCCCGT-TCCCGT-TCCCGTDesign primers
3026070GCGGATCCGAAGG-GCGGATCCGAAGG-GCGGATCCGAAGGDesign primers
3351400CGTCCT-CGTCCT-CGTCCT-CGTCCT-CGTCCTDesign primers
3511346CCGGCAGCC-CCGGCAGCC-CCGGCAGCCDesign primers
3580358CCAGCAAG-CCAGCAAG-CCAGCAAGDesign primers
3592413CGAGCG-CGAGCG-CGAGCG-CGAGCGDesign primers
3652802GCACCGAT-GCACCGAT-GCACCGAT-GCACCGATDesign primers
3825040CCGCGGCCTTCCCGG-CCGCGGCCTTCCCGG-CCGCGGCCTTCCCGG-CCGCGGCCTTCCCGGDesign primers
3940840AGGACGGCG-AGGACGGCG-AGGACGGCGDesign primers
4367389TCCGGC-TCCGGC-TCCGGC-TCCGGCDesign primers
4519614CTCCTG-CTCCTG-CTCCTG-CTCCTGDesign primers
4532050GCGGCGGGC-GCGGCGGGC-GCGGCGGGCDesign primers
4542881GAACTCGTCACC-GAACTCGTCACC-GAACTCGTCACCDesign primers
4615317CCGTGACCGCCGCCGCCACCA-CCGTGACCGCCGCCGCCACCA-CCGTGACCGCCGCCGCCACCADesign primers
4615482CCGCCACCGTGGTCG-CCGCCACCGTGGTCG-CCGCCACCGTGGTCGDesign primers
4687273CCGGCAC-CCGGCAC-CCGGCAC-CCGGCACDesign primers
4725773CTTGCC-CTTGCC-CTTGCC-CTTGCCDesign primers
4751834GGTGAGCCC-GGTGAGCCC-GGTGAGCCCDesign primers
4929437GTCCTCCGC-GTCCTCCGC-GTCCTCCGCDesign primers
4950996TCACCGCTG-TCACCGCTG-TCACCGCTGDesign primers
5109901GGCCGG-GGCCGG-GGCCGG-GGCCGGDesign primers
5111130ATGCGG-ATGCGG-ATGCGG-ATGCGGDesign primers
5150774CGAGTACGG-CGAGTACGG-CGAGTACGGDesign primers
5711513GGCACGGACACCGGT-GGCACGGACACCGGT-GGCACGGACACCGGT-GGCACGGACACCGGTDesign primers
5743177CTCGGG-CTCGGG-CTCGGG-CTCGGGDesign primers
6008022ACCAGGGGTACGACG-ACCAGGGGTACGACG-ACCAGGGGTACGACGDesign primers
6071752TAGGACGGC-TAGGACGGC-TAGGACGGCDesign primers
6083921GCCGA-GCCGA-GCCGA-GCCGA-GCCGADesign primers
6129746CCGAGAGCG-CCGAGAGCG-CCGAGAGCGDesign primers
6243265CGCCGCTC-CGCCGCTC-CGCCGCTCDesign primers
6264526CCGCACCGCACGGTT-CCGCACCGCACGGTT-CCGCACCGCACGGTTDesign primers
6392227GGAGTGAGCGGGTGGG-GGAGTGAGCGGGTGGG-GGAGTGAGCGGGTGGGDesign primers
6436137GCCGGAACTGACCAT-GCCGGAACTGACCAT-GCCGGAACTGACCATDesign primers
6551050GGAGTC-GGAGTC-GGAGTC-GGAGTCDesign primers
6894868GTGACGGAT-GTGACGGAT-GTGACGGAT-GTGACGGATDesign primers
7023051CAGGACCGG-CAGGACCGG-CAGGACCGGDesign primers
7151777CGGCCCAG-CGGCCCAG-CGGCCCAG-CGGCCCAG-CGGCCCAGDesign primers
7151818GGCCCGGCGGCCCAGC-GGCCCGGCGGCCCAGC-GGCCCGGCGGCCCAGCDesign primers
7417145GGCCAG-GGCCAG-GGCCAG-GGCCAG-GGCCAG-GGCCAGDesign primers
7427394CGGCTG-CGGCTG-CGGCTG-CGGCTGDesign primers
7506991ACGGCGGTG-ACGGCGGTG-ACGGCGGTGDesign primers
7564915GTGGCC-GTGGCC-GTGGCC-GTGGCCDesign primers
7584171CGCCAGCC-CGCCAGCC-CGCCAGCC-CGCCAGCC-CGCCAGCC-CGCCAGCC-CGCCAGCC-CGCCAGCC-CGCCAGCC-CGCCAGCCDesign primers
7713520GACGGCTACTCCGGCAGCTACTCG-GACGGCTACTCCGGCAGCTACTCG-GACGGCTACTCCGGCAGCTACTCGDesign primers
7819643TCTCCGGCT-TCTCCGGCT-TCTCCGGCTDesign primers
7841513CCAGG-CCAGG-CCAGG-CCAGG-CCAGGDesign primers
7861756CGCGCGCCTGCTC-CGCGCGCCTGCTC-CGCGCGCCTGCTCDesign primers
7865682CTGTGG-CTGTGG-CTGTGG-CTGTGG-CTGTGG-CTGTGGDesign primers
8109021CGCACCCCG-CGCACCCCG-CGCACCCCGDesign primers
8356004CGCTCATC-CGCTCATC-CGCTCATCDesign primers
8357338AGCCGT-AGCCGT-AGCCGT-AGCCGT-AGCCGT-AGCCGT-AGCCGTDesign primers
8372470CCGACGACC-CCGACGACC-CCGACGACC-CCGACGACCDesign primers
8952791CCGAGA-CCGAGA-CCGAGA-CCGAGADesign primers
8957539CCGGTT-CCGGTT-CCGGTT-CCGGTTDesign primers
9226239CACATGGCG-CACATGGCG-CACATGGCGDesign primers
9294480CGCAAC-CGCAAC-CGCAAC-CGCAAC-CGCAAC-CGCAAC-CGCAACDesign primers
9464815TGCGGG-TGCGGG-TGCGGG-TGCGGG-TGCGGGDesign primers
9567779CCTCGTG-CCTCGTG-CCTCGTG-CCTCGTGDesign primers

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