Microsatellites /Tandem Repeats database

Genome: Streptomyces hygroscopicus subsp. jinggangensis TL01

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
407017TGTCGCCGGGTCTGTCACCGGGTCTGTCTCCGGGTCDesign primers
427319GTTCCTGTGCCGCCGCCGGTTCCCGTGCCGCCGCCGGTTCCTGTGCCGCCGCCADesign primers
558298CGGGGTGGA-CGGGGTGGA-CGGGGTGGADesign primers
605856TCGTCGTCC-TCGTCGTCC-TCGTCGTCCDesign primers
691969CGGTGAC-CGGTGAC-CGGTGAC-CGGTGAC-CGGTGACDesign primers
708984CGGCTGA-CGGCTGA-CGGCTGA-CGGCTGA-CGGCTGADesign primers
776302CAACAGCCGTCCCGTGCCACAGCCGTCCCGTGCAACAGCCGTCCCGTGCAACAGCCGTCCCGCGDesign primers
824231CCCTCGCCTGAGGACAT-CCCTCGCCTGAGGACAT-CCCTCGCCCGAGGACATDesign primers
830039GGCGAGTAC-GGCGAGTAC-GGCGAGTACDesign primers
890226GGGCTGC-GGGCTGC-GGGCTGC-GGGCTGCDesign primers
910877CCACGTGTGTCAACCACATGTGTCAACCACGTGTGTCAADesign primers
973145GAAGCGTCAA-CAAGCGTCAA-CAAGCGTCAADesign primers
1033099GACAGGACCCCGGACAGGGCCCCGGACAGGACCCCADesign primers
1040594TCCGCCGGACG-ACCGCCGGACG-ACCGCCGGACG-ACCGCCGGACGDesign primers
1070017CGGCG-CGGCG-CGGCC-CGGCG-CGGCC-CGGCG-CGGCC-CGGCGDesign primers
1124433CGGGC-CGGGC-AGGGC-CGGGC-AGGGC-CGGGCDesign primers
1125085GGACGGCTGCACGCGATGC-GCACGGCTGCACGCGATGC-GCACGGCTGCACGCGATGC-GCACGGCTGCACGCGATGC-GCACGGCTGCACGCGATGCDesign primers
1139670GGTGCT-GGTGCT-GGTGCT-GGTGCT-GGTGCTDesign primers
1197542GTCCAGCCG-GACCAGCCG-GACCAGCCG-GACCAGCCG-GACCAGCCG-GACCAGCCGDesign primers
1197837ACGCCGTCGTCC-GCGCCGTCGTCC-GCGCCGTCGTCCDesign primers
1432009CTCGCCGCC-CTCGCCGCC-CTCGCCGCCDesign primers
1623440CACCGC-CACCGC-CACCGC-CACCGCDesign primers
1790623CAGCA-CGGCA-CGGCA-CGGCA-CGGCA-CGGCADesign primers
1822421ACTGACCAGAACCG-ACTGACCAGAACCG-ACTGACAAGAACCG-ACTGACAAGAACCGDesign primers
1994815ACGCCGACGCCCACGCCCACGCCCACGCCGACGCCCDesign primers
2001471CCTGCCA-CCTGCCA-CCTGCCA-CCTGCCADesign primers
2026916CACCGCCGGCCGCACCGTCGGCCGCACCGTCGGCCGDesign primers
2175403CCGTCGTTC-CCGTCGTTC-CCGTCGTTCDesign primers
2189881TCGCCCTTC-TCGCCCTTC-TCGCCCTTCDesign primers
2304170ACTCCGCCGTGAGG-ACTCCGCCTTGAGG-ACTCCGCCTTGAGG-ACTCCGCCTTGAGGDesign primers
2316925GGCTCACCG-GGCTCACCG-GGCTCACCGDesign primers
2335076GGAGCGGTGC-GGCGCGGTGC-GGCGCGGTGC-GGTGCGGTGCDesign primers
2501469CGCCGTCCGGGCGCTCGCCGTCTGGGCGCTCGCCGTCCGGGCGCTCGCCGTCCGGGCGCTDesign primers
2527059GTACCG-GTACCG-GTACCG-GTACCGDesign primers
2550776GCCGACGTC-GCCGACGTC-GCCGACGTCDesign primers
2585576CGCCCTCGCCCGCGCCTTCGCCCGCGCCCTCGCCCTDesign primers
2604899GGCCAGGGC-GGCCAGGGC-GGCCAGGGCDesign primers
2605414GGCACGGCACGGACAGGCACCGCACGGACAGGCACCGCACGGACADesign primers
2625367GGCAGG-GGCAGG-GGCAGG-GGCAGGDesign primers
2686788CGGCCGGCCCCCGCTCGTCATCGGCCGGCCCCCGCTCCTCGTCGGCCGACCCCCGCTCGTCGTDesign primers
2740934CCCCGGTGT-CCCCGGTGT-CCCCGGTGTDesign primers
2906942TCCCGT-TCCCGT-TCCCGT-TCCCGTDesign primers
3026068GAGCGGATCCGAAGGGCGGATCCGAAGGGCGGATCCGAADesign primers
3351396TCCCCG-TCCTCG-TCCTCG-TCCTCG-TCCTCG-TCCTCGDesign primers
3352664CCCCGGGTGACCGGGGTGGCCCGGGTGACCGGGGTGCCCCGGATGACCGGGGTGDesign primers
3412824CCTTCCAGTGCGGCGCCTTCCGGTGCGGCGCCTTCCGGTGCGGCGDesign primers
3486632GTCCCCGCGGTCGTCCCTGCGGTCGTCCCTGCGGTCDesign primers
3486833GTCGCCACCACGCCGGTCGTCGCCGCCACGCCGGTCGTCGCCGCCACGCCGGTCDesign primers
3511346CCGGCAGCC-CCGGCAGCC-CCGGCAGCCDesign primers
3511423GAAACACCTCAGGTCAAGCCGGAAACGCCTCAGGCCAAGCCGGAAACGCCTCAGGTCAAGCCCDesign primers
3580358CCAGCAAG-CCAGCAAG-CCAGCAAGDesign primers
3592413CGAGCG-CGAGCG-CGAGCG-CGAGCGDesign primers
3652802GCACCGAT-GCACCGAT-GCACCGAT-GCACCGATDesign primers
3825039ACCGCGGCCTTCCCG-GCCGCGGCCTTCCCG-GCCGCGGCCTTCCCG-GCCGCGGCCTTCCCGDesign primers
3940840AGGACGGCG-AGGACGGCG-AGGACGGCGDesign primers
3950207TGACGACGGCTGACGAGGGCTGACGAGGGCTGACGACGACDesign primers
4090403CCCTCCGCCCGCCCTGCATCCTCGCTCGGCCCGCCCTGCATCCTCGCTCCGCCCGCCCTGCATCCTDesign primers
4367389TCCGGC-TCCGGC-TCCGGC-TCCGGCDesign primers
4398767CGCGCCCGGGAC-CGCGCCCGGGAC-CGTGCCCGGGACDesign primers
4512450GTCGGCCACTGCCGGCCACTGTCGGCCACTDesign primers
4519614CTCCTG-CTCCTG-CTCCTG-CTCCTGDesign primers
4531559CGTCGGCTGGTCGTCAGCTGGTCGTCGGCTGGCDesign primers
4532050GCGGCGGGC-GCGGCGGGC-GCGGCGGGCDesign primers
4542877CACGGAACTCGTCACCGAACTCGTCACCGAACTCGTDesign primers
4615311CCGCCGCCGTGACCGCCGCCGCCACCACCGTGACCGCCGCCGCCACCACCGTGACCGCCGCCGDesign primers
4615465CGCCGCCACCGTGGTCACCGCCACCGTGGTCGCCGCCACCGTGGTCGCCGCCACCGTGGTDesign primers
4687273CCGGCAC-CCGGCAC-CCGGCAC-CCGGCACDesign primers
4725773CTTGCC-CTTGCC-CTTGCC-CTTGCCDesign primers
4751834GGTGAGCCC-GGTGAGCCC-GGTGAGCCCDesign primers
4796785GCGTCGCCGCCGATGGAGGCGTCACCGCCGATGGAGGCGTCGCCGCCGATGGAADesign primers
4929437GTCCTCCGC-GTCCTCCGC-GTCCTCCGCDesign primers
4950996TCACCGCTG-TCACCGCTG-TCACCGCTGDesign primers
5109901GGCCGG-GGCCGG-GGCCGG-GGCCGGDesign primers
5111130ATGCGG-ATGCGG-ATGCGG-ATGCGGDesign primers
5150774CGAGTACGG-CGAGTACGG-CGAGTACGGDesign primers
5305227TCAGGGTGCCGTCCGTCAGGGAGCCGTCCGTCAGGGAGCCGTCCGDesign primers
5509245CCCTGCCGCC-CCCTGCCGCC-ACCTGCCGCCDesign primers
5526101CCGGCCGTCCCCGGTGCAGGTCCCGCCGTCCCCGGTGCGGGTCCCGCCGTCCCCGGTGCCGGTDesign primers
5640057CGGTCCAGGC-CGGTCCAGGC-CGGTCCACGCDesign primers
5640089GTCCACGTCGGTCCACGTCAGCCCACGTCGDesign primers
5654987TGCCGGGTAGGGACCGTCTCCTGCCGGGTAGGGACCGTCTCTTGCCGAGGAGGGACCGTCTCCTGCCGGGTAGGGACCGTCTCCTGCCGGGGAGGGGCCGTCTCCDesign primers
5685995CCGGGCGCCGGTCGGCCGGACGCCGGTCGGCCGGGCGCCGGTCAGDesign primers
5706352CCCGGGCCGTCCCGGGCGGTCCCGGGCGGTDesign primers
5711509CGGCGGCACGGACAC-CGGTGGCACGGACAC-CGGTGGCACGGACAC-CGGTGGCACGGACAC-CGGTGGCACGGACAC-CGGCGGCACGGACACDesign primers
5743177CTCGGG-CTCGGG-CTCGGG-CTCGGGDesign primers
5801432TCCTCTCGCGCGGATCCTGTCGCGCGGATCCTGTCGCGCGGADesign primers
5934319GGGAAGCCCCGGAAGGCGGGGGAGCCCCGGAAGGCGGGGGAGCCCCGGAAGGCGDesign primers
5940604AACGGACGACAACGGACGAGAACGAACGACDesign primers
6008015TACGACAACCAGGGGTACGACGACCAGGGGTACGACGACCAGGGGDesign primers
6071752TAGGACGGC-TAGGACGGC-TAGGACGGCDesign primers
6083921GCCGA-GCCGA-GCCGA-GCCGA-GCCGADesign primers
6102051GGAGCCGTCGCCGGGGACGGAGCCGTCGGCGGGGACGGAGCCGTCGCCGGGGGCDesign primers
6129746CCGAGAGCG-CCGAGAGCG-CCGAGAGCGDesign primers
6243091TGTGCCGCCGTTCCGGTGCCTGGG-TGTGCCGCCGTTCCGGTGCCTGGG-CGTTCCGCCGTTCCGGTGCCTGGGDesign primers
6243265CGCCGCTC-CGCCGCTC-CGCCGCTCDesign primers
6264525ACCGCACCGCACGGT-TCCGCACCGCACGGT-TCCGCACCGCACGGTDesign primers
6392226CGGAGTGAGCGGGTGG-GGGAGTGAGCGGGTGG-GGGAGTGAGCGGGTGGDesign primers
6413393CCTTCTTTCCTTCCGCCTTCTTGCCTTCCGCCTTCTTCCCTTCCGDesign primers
6436136GGCCGGAACTGACCA-TGCCGGAACTGACCA-TGCCGGAACTGACCADesign primers
6536444CGGTGGCGGGCGGTACGGCGGCGGGCGGTACGGCGGCGGGCGGTADesign primers
6551050GGAGTC-GGAGTC-GGAGTC-GGAGTCDesign primers
6602869CGGGCGGTGCCTGGCGGTGCCCGGCGGTGCDesign primers
6638274GCCGTCGCCGACGCGGACGCCGAGGACGTCGCCGACGCGGATGCCGAGGATGTCGCCGACGCGGACGCCGAGDesign primers
6840672GCGTTCCGCACAAGCCGGCGAGCGTTCCACACAAGCCAGCGAGCGTCCCGCACAAGCCGACGADesign primers
6894868GTGACGGAT-GTGACGGAT-GTGACGGAT-GTGACGGATDesign primers
6932956CGCCGTCTGAGCACGCGGTCTGAGCATGCCGTCTGAGCADesign primers
7023051CAGGACCGG-CAGGACCGG-CAGGACCGGDesign primers
7151774CGCCGGCCCAGCGGCCCAGCGGCCCAGCGGCCCAGCGGCCCAGCGGCCCGGCGGCCCAGCGGCCCGGCGGCCDesign primers
7172542AGGAGACGGCTTCCGAGAAGGAGGCGGCTTCCGAGAAGGAGCCGGCTTCCGAGADesign primers
7342079CACTCCACGGCACTTCACGGCACTTCACGGDesign primers
7345522GCCGAGGCTCCGGCC-GCCGAGGCTCCGGCC-GCTGAGGCTCCGGCCDesign primers
7394175GTACCGGGCGGTCCCGGGCGGTTCCGGGCGDesign primers
7417144CGGCCA-GGGCCA-GGGCCA-GGGCCA-GGGCCA-GGGCCADesign primers
7427394CGGCTG-CGGCTG-CGGCTG-CGGCTGDesign primers
7506991ACGGCGGTG-ACGGCGGTG-ACGGCGGTGDesign primers
7541857GCCGAGGCCGTGACGCCGACGCCGTGACGCCGACGCCGTGACDesign primers
7564915GTGGCC-GTGGCC-GTGGCC-GTGGCCDesign primers
7584169GTCGCCAG-CCCGCCAG-CCCGCCAG-CCCGCCAG-CCCGCCAG-CCCGCCAG-CCCGCCAG-CCCGCCAG-CCCGCCAGDesign primers
7713518ACGACGGCTACTCCGGCAGCTACT-CGGACGGCTACTCCGGCAGCTACT-CGGACGGCTACTCCGGCAGCTACTDesign primers
7813687CGCGCGGGCGGGACGAGAGGCTCACGCGGGCGGAACGAGAGGCTCACGCGGGCGGGACGAGAGGGTDesign primers
7819643TCTCCGGCT-TCTCCGGCT-TCTCCGGCTDesign primers
7841513CCAGG-CCAGG-CCAGG-CCAGG-CCAGGDesign primers
7844481GGGCGCGGATCAATGGGGCGCGGGTCAATGGGGCGCGGGTCAATGDesign primers
7861754TTCGCGCGCCTGCTCCGCGCGCCTGCTCCGCGCGCCTGCDesign primers
7865680GCCTGT-GGCTGT-GGCTGT-GGCTGT-GGCTGT-GGCTGTDesign primers
7979576GGGGAGCGTCGGGGGAGCGCCGGGGGAGCGTCGDesign primers
8109021CGCACCCCG-CGCACCCCG-CGCACCCCGDesign primers
8184715CGAGCGCGACCGAGCGCCACCGAGCGCGGCDesign primers
8203636TCCGGGGGCGGGTACGGGGGCGGGTACGGGGGCGGGDesign primers
8356004CGCTCATC-CGCTCATC-CGCTCATCDesign primers
8357336GCAGCC-GTAGCC-GTAGCC-GTAGCC-GTAGCC-GTAGCCDesign primers
8372470CCGACGACC-CCGACGACC-CCGACGACC-CCGACGACCDesign primers
8952791CCGAGA-CCGAGA-CCGAGA-CCGAGADesign primers
8957539CCGGTT-CCGGTT-CCGGTT-CCGGTTDesign primers
9226239CACATGGCG-CACATGGCG-CACATGGCGDesign primers
9294479TCGCAA-CCGCAA-CCGCAA-CCGCAA-CCGCAA-CCGCAADesign primers
9365953GTCGCTGGTCATGCCGCTGGTCATGTCACTGGTCATDesign primers
9464815TGCGGG-TGCGGG-TGCGGG-TGCGGG-TGCGGGDesign primers
9567779CCTCGTG-CCTCGTG-CCTCGTG-CCTCGTGDesign primers

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