Microsatellites /Tandem Repeats database

Genome: Strawberry lethal yellows phytoplasma (CPA) str. NZSb11

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
2692TTTTTTTTCTTATTTTTTTAATTTTDesign primers
7724GCATTTGCAATTTTGACAACTGCAATTTTGGCAATTACATTTTTGDesign primers
20455TATTTTTTTTTAGTTTAATTAATTTDesign primers
30127AT-GT-TT-AT-GC-TT-AT-TT-TT-AT-TT-TTDesign primers
32318AATTTTTTAAAATTTTTTGTTATTTTTAAADesign primers
58170AAAAAGAAAAGGAAAAATAAAAAADesign primers
59919AA-AA-AA-GA-AA-AA-AA-CA-AA-TA-AA-AA-ADesign primers
75835TGCTTATGGTTATGCTTTTGCTAADesign primers
87088CTT-TAT-TTT-TCT-TAT-TTT-TTC-TTC-TTT-TTTDesign primers
98356TCTTGTTGTTGTTCTAGTTTTTGTDesign primers
102685TT-TT-TT-AT-TT-GT-TT-TT-TT-CT-TT-TT-TDesign primers
114859AT-AA-AA-CA-AA-AG-AA-AA-AA-AA-AG-AA-ADesign primers
154316AAAACAAAAACTAGAACAACAACADesign primers
197544ATTTTAGTTAATTTTAAATAATTTTTTTTADesign primers
221261TAAAATAAATAAAAATAAAATATAADesign primers
236154TGTTTTTGATTTTGTTTTTGCTTTDesign primers
244246TTTTTATTTTCTTTTTCTTTTTGTTATTTTDesign primers
253565AAAAAATAAAAGAAAAAAGAAAATADesign primers
259848ATT-ATT-ATA-ATT-ATA-ATT-ATT-ATTDesign primers
264138TTGTTGTAGTTGTAGTTGTTGTTTDesign primers
305755AAAAAGAAAAGGAAAAATAAAAAADesign primers
305963AAAATATT-AAAATATT-AAATTATT-AAATTATTDesign primers
327734GAAAAAGAAAATTAAAAAGCAAAADesign primers
338760TATTATTTTAAATTTTTTTATATTTTTTTADesign primers
345169ATTTAAATAATTAAATAATTAAATDesign primers
357687TTAAACAAAACTAAAAAAAATTAAATAAGADesign primers
357729AAAAAATAAAAAAACAAAATAAAACDesign primers
369351TTATTTTTTTTTATTTGTTTTTTTTATTTTGTATTTTATTDesign primers
383479AAAAAAGAAAAAAATGAAAATAAAADesign primers
386578AAAAAACATTAGAAAAAATTAAAAAAGATTDesign primers
389381AATTTAATATAACTTAATTTAATTADesign primers
410103ATTTTAATT-TTTTTAATT-TTTTTAATTDesign primers
413987ATTTTTAAAATTAAAAAATTTTTGGAAATTAAAAAAATTCTTAACATTCAAAAADesign primers
431325AAA-AAA-AAT-AAA-ATA-ATA-AAA-AAA-ADesign primers
437467TTGTTTAGTTTTGTTTTGTTTAGTTTTATTDesign primers
452335GTTTAGTTTTGTTTCTTTTAGTTTTDesign primers
453487AA-AA-GA-CA-AA-GA-AA-AA-GA-AA-AA-CADesign primers
513433CAAAAAAAAAAAAAAACAACAAAADesign primers
517605AAAACAAAAACTAGAACAACAACADesign primers
521351AATTTTTTTGATTTTATTTGGTTTTTTTTGDesign primers
523852TCTTAATATCAATTAATATTTAATTCTTATCAATTAATATTTAATTCTTATCAATTAATATTTDesign primers
535537GTAGTTCTTCTTGTTGTTTAAATAACTCTTCTTGTTGTTTAAGTAACCCTTCGTGTTGTTTAADesign primers
536729TT-TT-TT-AT-TT-GT-TT-TT-TT-CT-TT-TT-TDesign primers
555648TTTATAGAAATTAATATAAATTTTTAAAAADesign primers
559674AA-AA-AA-AA-CA-AT-AA-AA-AA-AC-AA-AC-ADesign primers
562411AAATAAATTAAAAAAAAATTAAATTDesign primers
566237ACAAAATAAAAAAATAACAAAATCDesign primers
601116AA-AA-AA-GA-AA-AA-AA-CA-AA-TA-AA-AA-ADesign primers
616924TT-TT-TT-AT-TT-GT-TT-TT-TT-CT-TT-TT-TDesign primers
645893TAAAATACAACAAAAAAAAATATAADesign primers
650867AA-AA-AG-AA-AA-TG-GA-AA-AG-AA-AA-AADesign primers
654059AAAAATGTATTTAAAACTGAATTTTAAAATATATTTDesign primers
662977TCTTGTTGTTGTTCTAGTTTTTGTDesign primers
667307TT-TT-TT-AT-TT-GT-TT-TT-TT-CT-TT-TT-TDesign primers
747433TTTTTTATTTTTATTTATTTTTTTGDesign primers
751824AAAAAAATAAAAAATAATAGAAATAAATTADesign primers
774732TTTTCTTTTATCTTTTTTTATTCTTTTTTADesign primers
774994TATAGGAATTATAAGAATTATAGGAATDesign primers
780176ATAAAAAATAAGAAAAATTAGTAATAAATADesign primers
780414ATAAAATTAACTAAAATAACTTAAADesign primers
788041AAAAAACTTTCAAAATCTTTAAAAATGTTTDesign primers
804935ATATTTATTAATTTTTATTTATTTTCATTADesign primers
832537AA-AA-AA-GA-AA-AA-AA-CA-AA-TA-AA-AA-ADesign primers
886755AAACAAAAAAATAAAAAAACCAAAAAACAAAGAAACCAAADesign primers
892515ATTTAATAAAATTAAAAAAAGTTTAAAAAADesign primers
893118AAATAATTTTAAAAGAGTTTTAAAATATTTATADesign primers
899492TCTTTTAAT-TCTTTTAAT-TCATTTAATDesign primers
899729TTTTCTATTTCTTCTTCTCTTTCTDesign primers
928955AAAAAAGAAAAAACAAATAAAAAATDesign primers
948357TT-TT-TT-TA-TT-TC-TT-TC-TT-TT-TG-TT-TDesign primers
949876AAAAATAAATAAAATAAAAAAAATTAADesign primers
958066TATTTCTTAATTGTTCCTTAATTGTTCCTTAATDesign primers
958170ACCAATAATA-ATAAATAATA-ATAAATAATA-ATAAATAATADesign primers

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