Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bacillus licheniformis 9945A

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
210287	ACAATATATACAATATGTACAATATAC	Design primers
639179	AGACATAACAAAGATATACCAAAAACATAACTA	Design primers
654561	TT-TT-TT-CT-TT-TT-TG-TT-TT-AT-TT-GT-T	Design primers
658386	CATGGGCGG-CATGGGCGG-TATGGGCGG	Design primers
672957	AAAGAAGAAGAAAATGAACAAGAAACAGAA	Design primers
743546	GGGTTTTAT-CCGTATTAT-TTGTTTTAT-CCGTTTTAT-CCGTTTTAT-CCGTTTTAT	Design primers
845478	TTAATTTAAATTTTATTTTAAATT	Design primers
895614	GGCCCAACAGGACCAACAGGCCCAACC	Design primers
895683	ACGGGAGCGACCGGATCAACAGGTCCGACCGGATCAACAGGTCCGACCGGATCA	Design primers
895738	CAGGCCCGACAGGCGCAACAGGCCCGACGGGATCAACAGGCCCGACCGGAGCAA	Design primers
895816	CAACAGGTCCAACGGGAGCGACAGGACCGACGGGAGCGACGGGTCCAACGGGAG	Design primers
896014	CAACAGGTCCGACGGGAGCGACAGGTTCGACAGGAGCGACGGGTCCGACAGGAG	Design primers
896077	CAACAGGAGCCACAGGTCCAACGGGAGTGACAGGTCCGACAGGAGCCACAGGTC	Design primers
896132	AACGGGAGC-AACGGGAGC-AACGGGAGC	Design primers
896160	ACGGGTCCAACAGGAGCCACAGGTCCAACAGGCGCAACGGGTCCAACAGGTCCA	Design primers
896215	CAGGAGCCACAGGTCCAACAGGAGTAACAGGTCCGACGGGAGCGACAGGTCCAACAGGAGCGACAGGTCCGA	Design primers
897399	GGTCCAACCGGAGCCACAGGTCCTACGGGAGCAACAGGTCCAACAGGAGCCACC	Design primers
897933	TCAACCGGTCCAACCGGA-GTAACAGGTCCAACCGGA-GTAACAGGTCCAACCGGA-GTAACAGGTCCAACCGGA	Design primers
898494	ACGGGTCCAACAGGAGCAACCGGTCCGACGGGAGCAACCGGGGCAACAGGAGCA	Design primers
898716	GCAACCGGAGCAACGGGTCCAACAGGAGCAACCGGTGCAACCGGAGCGACAGGT	Design primers
898771	CAACAGGAG-CAACAGGAG-CAACCGGAG	Design primers
899016	ACGGGTCCAACAGGAGCAACCGGTCCGACGGGAGCAACCGGGGCAACAGGAGCA	Design primers
899122	CAACGGGAGCGACAGGCGCAACGGGAGCAACCGGAGCGACGGGAGCGACAGGCG	Design primers
899247	GCAACCGGAGCAACGGGTCCAACAGGAGCAACCGGTGCAACCGGAGCGACAGGT	Design primers
899302	CAACAGGAG-CAACAGGAG-CAACCGGAG	Design primers
899754	ACAGGAGCAACGGGTCCGACAGGAACAACCGGCCCGACCGGAGCAACGGGTCCA	Design primers
899860	CAACGGGAGCCACAGGCGCAACGGGAGCAACCGGAGCGACGGGAGCGACAGGCG	Design primers
899952	ACAGGAGCA-ACAGGAGCA-ACCGGAGCA	Design primers
900375	ACAGGAGCAACGGGTCCGACAGGAACAACCGGCCCGACCGGAGCAACGGGTCCA	Design primers
900663	ACGGGAGCCACAGGCGCAACGGGAGCCACCGGAGCGACGGGAGCGACCGGAGCA	Design primers
900933	ACCGGAGCGACCGGACCGACGGGAGCG	Design primers
901134	GGAGCAACCGGAGCGACCGGAGCAACG	Design primers
901458	GGTCCAACAGGAGTAACCGACCCAACAGGAGCAACCGGTCCAACAGGAGTAACC	Design primers
901697	AACCGGGGCAACGGGAGCCACCGGAGCGACGGGAGCCACAGGCGCAACGGGAGC	Design primers
903302	CCAACCGGCCCGACTGGAGCAACCGGCCCAACAGGAGCAACCGGCCCGACCGGAGCAACCGGCCCAACAGGAGCAACCGGCCCGACGGGAGCAACCGGCCCAACAGGAGCAACCGGTCCGACGGGAGCAACCGGCCCAACAGGAGCAACCGGCCCGACGGGA	Design primers
903542	GGCGCAACCGGAGCAACAGGCGCAACGGGAGCGACGGGAGCAACCGGCCCAACA	Design primers
903662	GCAACGGGAGCGACGGGAGCAACCGGTCCGACGGGAGCAACGGGAGCGACAGGC	Design primers
903807	CAACCGGAGCGACAGGAGCAACCGGTCCGACGGGAGCAACCGGCCCGACAGGAGCAACGGGAGCGACAGGCG	Design primers
903953	ACAGGCGCAACCGGAGCGACAGGCGCAACAGGTCCGACGGGAGCAACCGGAGCGACAGGCGCAACCGGAGCGACAGGAGCAACCGGTCCGACAGGAGCAACCGGAGCGACAGGCGCAACCGGAGCGACAGGCGCAACGGGAGCGACAGGCGCAACGGGAGCGACAGGCGCAACGGGAGCGACAGGCGCAACGGGAGCGACAGGAGCAACCGGTCCGACGGGAGCAACGGGAGCG	Design primers
904250	ACGGGAGCAACGGGAGCGACAGGAGCA	Design primers
904289	GGAGCAACCGGCCCGACAGGAGCAACGGGAGCGACAGGAGCAACGGGAGCGACAGGAGCAACAGGAGCGACAGGAGCAACCGGCCCAACAGGAGCAACAGGTCCAACAGGAGCAACAGGAGCGACA	Design primers
904500	CAACCGGAGCAACGGGAGCAACCGGCCCAACGGGAGCAACCGGCCCGACGGGAG	Design primers
904568	GGAGCAACCGGGGCAACCGGAGCAACGGGAGCAACC	Design primers
904653	CAACCGGTCCAACAGGTCCAACCGGAGCGACAGGTCCAACCGGCCCAACAGGTC	Design primers
904754	ACAGGTCCAACCGGAGCG-ACAGGTCCAACTGGCCCG-ACAGGTCCAACTGGCCCG-ACAGGTCCAACTGGCCCG	Design primers
904827	CGGGTCCAACTGGCCCGACAGGTCCAACTGGCCCGACAGGTCCAACCGGCCCAA	Design primers
1143543	CAGCTCCAACAGCAATGGCCCGCGCAGCTCCAACAACTGTGGCCCGCGCAGCTCCAACAGCTGTGGCCCATGCAGCTCCAACAGCAATGGCCCGCGCAGCTCCAGCAGCTGTGGCCCGCGCAGCTCCAGCAGCTGTGGCCCGCG	Design primers
1198438	TAA-TAG-TAG-TAA-TAA-TAG-TAG-TAG-TAG	Design primers
1277475	AAAAGCAAGAAACCCGACAAAAGCAAGAAACCTGATGACTGCAAGAAACCCGACAAAAGCAAGAAACCTGAT	Design primers
1389108	TGGCGGAGGCTACGGCGGCGGCTACAGCGGAGGCTATGGCGGCGGCTA	Design primers
1643081	ATCGGGATCATC-GGCGGGATCATC-GGCGGGATCATC	Design primers
1844529	AAAGAAAAAGCAAAAGACAAAGAC	Design primers
1982285	TAAGAAAATAGAAGAAAAAATAATAAAAGA	Design primers
2339185	CGGGAATCTGGC-CGGGAATCTGGC-CGGGTATCCGGC	Design primers
2425158	GATCAAAACAAAGATCAGAATAAAGACAAAAACAAA	Design primers
2458680	TCTCAACTCAGCTCATCTCAGCTCA	Design primers
2655479	CATCGCCAGCGCCCTCGCAATCGC	Design primers
2674606	TTTTCTCTGTTTTTTTCTGATTTTCTCGAT	Design primers
2780742	CCCAGCCAAGCCCGGCGCAGCCGAG	Design primers
2938657	TGGCGGATACGGCGGTGGATACGGCGGCGGATACGG	Design primers
3077093	CAGCGACAGCCAAAGCGACCGCGA	Design primers
3228052	CCGCTTTCGCTTTCGCTTCCACTT	Design primers
3475166	TTTTTTCATATTTATGCATATTTTTTCTTC	Design primers
3792680	AA-AA-GA-GA-AA-GA-AA-AA-GA-AA-AA-AA	Design primers
4341246	TATATTTTTTTATTTTTTTCTATTATTTTT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

210287

ACAATATATACAATATGTACAATATAC