Microsatellites /Tandem Repeats database

Genome: Pseudomonas aeruginosa RP73

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
78513GCCGAAGCCGTAGCCGACGCCGATDesign primers
84060CCAGGCCGCCGGCCAGGCCGCCCAGGAGGCCGCCGGDesign primers
90115TGGCGG-AGGCGG-GGGCGG-GGGCGGDesign primers
96857GCAGGTGCAGGCGCTGGTGCGGGTDesign primers
99901TGGCTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTG-GCTGTGDesign primers
179300GCCGCCGCCGGCACCGCCGCGGCCDesign primers
193762GGCGGGAAGGGGCAGGAAGCGGCGGGAGCGDesign primers
200569GGCCTCGGCCGCGGCCGCGGCTTCDesign primers
215881GCCCTGGCCGTGGCGCTGGGCCTGDesign primers
336961ATCCTGATCATCCCGATCATCCTGTTCDesign primers
346970TTGATCAGG-CTGATCAGG-CTGATCAGGDesign primers
412507GCCGAG-ACCGAG-ACCGAG-CCCGAGDesign primers
446849TGACCGTGGCCGCGACCGTGACCGDesign primers
478429CGGCGGCGGCGATGGCGGCGGCGGDesign primers
525273GGCGAGGGCGATGGCTAGGGCGAGDesign primers
587232GCCGCCACCGCCGCTGCCGCCTCCDesign primers
626358CGCCGTCGCCTTCGTCGTCGCTGTDesign primers
643001GCCCGGGCCGGACCGGGGCGGCCAGGGGCGDesign primers
658538GCTGCTGGCCTACCCGCTGGCCTACCTGCTGGCCAADesign primers
745119GCC-GCC-ACC-GCC-TCC-GCC-GCC-GCCDesign primers
830893CTG-GTG-ATG-GTG-GTG-GTG-CTG-ATGDesign primers
931349CTGATC-CTGTTC-CTGCTG-CTGTTC-CTGTTC-ATGTTCDesign primers
957113GGTACTGCTGGTGCTGCTGGTCCTGCTDesign primers
1018418AGAAGCTCGAGCAGCAGAAACTCGAGCAACAAAAGCTGGAACAGCDesign primers
1018657GAGGACGCCAAGAAAAAGGCAGCCGAGGACGCGAAGAAGAAAGCGGCCGAGGAGGCCAAGAAGAAGGCTGCTDesign primers
1018776GGC-CGC-CGC-CGC-TGC-CGC-GGC-AGCDesign primers
1020577CTGGCTCTGGCCATGGCTGTGGCTDesign primers
1180117GACCAT-GGACAT-GACCAT-GGCCAT-GGCCAT-GGCCATDesign primers
1341783GACCTGGAACTGGACCTCGACCTGDesign primers
1443422CCGCGCCGAGCAGCGCCGAGCCGAGDesign primers
1481389TGG-TCG-TGG-TGG-TGG-TGG-TGG-TGGDesign primers
1503841TTCGCCTTCGTCTTCGGCTTCGCCDesign primers
1524444CGGCGCTGGCGCCGGCGCCGGCGADesign primers
1594196CCCCA-GGCCA-GGCCA-GGCCA-GGCCA-GGCCADesign primers
1647013AGGCCATGGCCAAGGCCGTGGCCADesign primers
1657983TGCCGCCATGGC-TGCCGCCCTTGC-CGCCGCCATGAC-CGCCGCCATGAC-CGCCGCCATGACDesign primers
1730312CTCGCT-GCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAGDesign primers
1730509TGACGAGCA-GGACGAGCA-GGACGAGCADesign primers
1774136AAAGGCGTCA-CTAGGCGTCA-CTAGGCGTCADesign primers
1955237GGAGCCGCAGCCGGTGCCGCAGCCDesign primers
2133732CGCTGGCGGCAACTGGCGGCCGCCGGCGCCDesign primers
2175482GTCGTCGGCGAAGTCGTCGGCGTGGTCTTGGGCGAADesign primers
2287537CCTCGTCGTCGTCCTCGCCCTCGGDesign primers
2303833TCGGCCTCGCCCTCGGCGCCGGCCDesign primers
2325455CCTCGGACTCGGCTTCGGCGTCGGDesign primers
2330962GGCCGAGGCCGCGGTCGATGCCGADesign primers
2454092GACGCCGCCGCCGAAGCCGCCGCCDesign primers
2488929TGCAGGCCGTGCCGGCCGTGCAGGCGGDesign primers
2618287CGTCGGCGCCGGCGGCGGCGTTGGDesign primers
2669755GGCACCTCGCTGACCAGCAAGGCCGGGACGTCGCTGACCAACCAGGCCGGCACCTCCCTCACCAACAAGGCCDesign primers
2733745CCGCCGCGGCCGCTGCCGGCGCCGDesign primers
2733971CTGCTGGCCCTGCTCGCCCCGCTGGCCDesign primers
2777364GCGCG-GCGCG-GCGCT-GCTCG-TCGCGDesign primers
2780078CCGTGA-TCGTGA-TCGTGA-TCGTGA-TCGTGADesign primers
2880010CCAGCGCCACCGCCAGCGCCAGCTDesign primers
2963271TGCAACACC-TGCAACACC-TGCAACACC-TGCAACACC-TGCAACACC-TGCAACACCDesign primers
2970077CGA-GGA-CGA-GCA-GGA-GGA-CGA-CGADesign primers
2977014GGACGACGC-CGACGACGC-CGACGACGCDesign primers
3039144GCCGCGGCGCGCAGCGCCTCGTCGCDesign primers
3163711ACCAGCAG-CCCAGCAG-CCCAGCAG-CCCAGCAGDesign primers
3289685CACCGCAACCGCAACCGCCACCGGDesign primers
3305702GTGCTG-GTGCTG-ATGCTG-GCGCTGDesign primers
3419332TCCAGATCGAGAGCCAGATCGAGADesign primers
3421448AGCCGCAGCAGCAGCCGAAGCGGCDesign primers
3564183CACCACCGCCACCACCAGCAGCACDesign primers
3805812CCGGCAGCGGCACCCGCACCAGCADesign primers
4230197GGCGCGGCTGCGCGGCGGCGCCGCDesign primers
4428572CGGCGCCGGCCCCGACGCCGCCGCDesign primers
4451250CGGCAGCGCCAGCGGCCGCGGCACDesign primers
4497761GGTTTCTTCGGCTTCTTCGGTTTCTTCDesign primers
4574851CCAGGAGCAGGACCAGGGCCAGCADesign primers
4601679TCGCCGACGCCGTCGACGTGGCCGDesign primers
4606836ACGACC-ACGACC-ATGACC-ACGCCCDesign primers
4607150GGCCAC-GAACAC-GAACAC-GAACAC-GAACAC-GAACACDesign primers
4756644CCAGCGGCAGCGCCAGCAGCAGCGCCAGCGDesign primers
4756675GGCCAGGACCAGGGTCAGGGCCAGDesign primers
4846515GCAGCGGCAACGGTAGCGGCAGCADesign primers
4980986TCATGCCGC-CCATGCCGC-CCATGCCGCDesign primers
5026045ACCCTGGCCCTGAGCCTGGCCCTGDesign primers
5182152CCGCCGTCGCCACCGTCGCCGCCGTTGDesign primers
5271021CCGCCTCCC-CCGCCTCCC-CCGCCTCGCDesign primers
5411450GCGCCGCGCTGCGCGCCGCCGCGCGDesign primers
5445824GGCGGTTACTGGGGCGGCTACTGGGGAGGATACTGGDesign primers
5458327CGGGAAACG-GGGGAAACG-GGGGAAACGDesign primers
5458355CTGGGGG-CTGGGGG-CTGGGGG-CTGGGGG-CTGGGGG-CTGGGGGDesign primers
5479764GGCCAGGACCAGCGCCAGGGCCAGGGCCATDesign primers
5498618TCAGGGTCAGGCTCATGGTCAGGTDesign primers
5548572TCCTCG-GCCTCG-CCCTCG-CCCTCG-CCCTCGDesign primers
5568903GCACCGCCAGCACCGGCAGCACCGCCADesign primers
5672082CCGCGCCCGGGCCCGCGGCGGCGCDesign primers
5771670CTTGGCTGCCGGCTTCTTCGCCGCAGGCTTTTTCGCAGCCGGCTTDesign primers
5771751AGCGGCCGGCTTGGCTGCCGGCTTCGCGGCAGGCTTDesign primers
5778533CTTCGCCTTCGGCGTCGCCTTCGADesign primers
5825954CAACGGCAACGCCAGCGGCAACTGDesign primers
5855695CAGGATCAGGGTCTGGATCAGGACDesign primers
5962092CCGGCATCGCCGGTATCGCCCGCATCGDesign primers
5991659TTCGCCGCAGGCTTCGCAGCCGGCTTGGCTGCAGGCDesign primers
5992034TTCGCAGCAGGCTTCGCAGCCGGCTTGGCCGCAGGCDesign primers
6000670CGCCAG-CACCAG-CACCAG-CACCAGDesign primers
6006609ACCAGCACCGGCACCAGGATCAGCDesign primers
6071169CGCCACGGCGCGCTCCGGCGCGCCATGGCGDesign primers
6103032GCCAGCGCCAGACCCAGCGCCAGGDesign primers
6194776GCGATGGCGGTGGCGATGGCGATGDesign primers
6226318GCCGTGGCCGCGGCCCTGGGCGTGDesign primers
6303003GGTTTGGGCTTGGGTTTCGGCTTGGGCTTGGGTTTTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.