Microsatellites /Tandem Repeats database

Genome: Mannheimia haemolytica D171

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
130423GAAATAATTTCAAACAATTTAAAATAATTADesign primers
194712GCTGAGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGC-TGTCGGCDesign primers
267043CCGGTCGTGCCGGTCGTTCAGGTCGTGDesign primers
393482ATTATTATTTTTATAATTAGTATTATTATCDesign primers
456195TTGGC-AAGGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGCDesign primers
553420CCTGCTGCATTT-GCTGCTGCATTT-GCTGCTGCGTTTDesign primers
561849CATTCCGCCCATTCCCCCCATACCGCCDesign primers
608475AAAAA-ATGAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAA-TCAAADesign primers
694060CACAAAATACTCCTCTGGCACAAAATACTCCTCAGGTACAAAATGCTCCTCAGGDesign primers
826823TATGAT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCTDesign primers
831153AAAGAATAAGAAAAATAAAAAGGADesign primers
888996ATTATTATTTTTATAATTAGTATTATTATCDesign primers
897689TAGCTTGTAAGTTAGCTTATAAGTTTACTTGTAAGTDesign primers
1216744ATCCCAATTTTTCTC-AGCCCAATTTTTCTC-AGCCCAGTTTTTATC-AGCCCAATTTTTATCDesign primers
1265165AATGAAATGCACTGAAATGCAGTGADesign primers
1277284GCTGCTGCTACTGCTGCCGCTGCTDesign primers
1283978TTCCTACCAA-CTACTACCAA-CTACTACCAA-CTACTACCAADesign primers
1284019TACTACTTAC-TACTACTTAC-TACTACCAACDesign primers
1294519TGTTATAA-GGTTATAA-GGTTATAADesign primers
1318080GCAATCAAAACCAATCATAAACAATCACAADesign primers
1395939TAAAAATCATTCAAAATGATGAAAAATCAADesign primers
1416823GGTGGTGATGGTGGCGATGGTGGTGATDesign primers
1446107TACA-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTGDesign primers
1638342GAGTATCCATAGAGTCTCCATAGAGTCTCCTTADesign primers
1862887ATAGAAATGTATAGATTTGTATAGAGTTGTDesign primers
2070661TTTTAATAA-TTTTAATAA-TTTTAATGADesign primers
2082931ATTTCAC-TATTCAC-TATTCAC-TATTCAC-TATTCAC-TATTCACDesign primers
2127221GAGCTGGAAGCT-ACGCTGGAAGCT-ACGCTGGAAGCTDesign primers
2240658TTTTTGTTTTTTCTTTTGTTCTTTTDesign primers
2281763TGATTTGTTTTGATTGGATTTGATTDesign primers
2338485AAAAATAAAGATCAAAATAAAAACDesign primers
2452101CTTTTACCCACTTTTAACCCACTTTACCCADesign primers
2453939TTGTTCAACTTGGCTTAAGTCTTCAAATTGGCTTAAGTCTTCAAATTGGCTTAADesign primers

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