Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes strain J1926

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
215576TTGCTTGTTTTG-TTGCTTGTTTTG-TTGCTGTTTTTGDesign primers
416685AGAAAAAGCAGATAAAGCAGAAAAAACDesign primers
455567AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
485365TTTGTATTAGTATTGGTATTTTTADesign primers
534813GACACCAAAAGATACACCAAAAAATACACCAAAAGADesign primers
576002TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
648041AA-AA-AA-TA-AA-AA-AA-GA-AA-TA-AA-TA-ADesign primers
819359AGAACAAAAACAACAACAAGAAAADesign primers
851645AAAAAGAAGAAGAAAACGAAACAGDesign primers
975598TTTTTTTATTTTTTATCTTTTTTATDesign primers
985442ATAAAAGAAATAAAACAAATACAAGAADesign primers
998791TGCACATGTACATGTACATGCGCADesign primers
1022414ACCCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1170689CCAACGCCAAATCCAACACCAGATCCGACGCCAAATDesign primers
1257299TTTTTTTTATTTTTCTTTCTTTTGTDesign primers
1497093GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1610216TTG-GTT-CTT-CTT-TTG-GTT-CTT-CGA-TTT-TTT-CTT-CTTDesign primers
1675960GGCGGTATTGGTGTTGGTGGCACTGGTGTT-GGTGGTACTGGTGTTGGTGGCACTGGTGTT-GGTGGTACTGGTGTTGGTGGCACTGGTGTT-GGTGGCACTGGTGTTDesign primers
1745012TCTTTTGTTGTTTCATTTGCTGTTTCTTTAGCTGTTDesign primers
2028221ATTGTTTTTGTTATTGGTGTTGTTDesign primers
2150570GATGAAGACGAAGATGACGATGATDesign primers
2313089TAAAAAAGTAAAATAGTAAAAGAGDesign primers
2325625AAGAAACATTAATAAACAATAAGAACCTTTDesign primers
2379102AAGCAAAAGCAGAAGGAAAAGCAADesign primers
2398110AAATGAACAACAGACGAACAACAAACGAACAACAGATGTACAACDesign primers
2398168AATAAAGATAATAAAGAGAAGAAAGATAATAAAGATDesign primers
2787175AGAAAAAGCTGCGGCTGACAAAGCTGCTGCCGAGAAAGCTGCTGCDesign primers
2836559TCCTCTTCTGCTTTCTTCTTAGCCTCTTCTTCTTTTTTCTTCTCTTCATCTGTTTTCTTTTTATCTTCTTCCGCTTTTTTCTTCDesign primers
2933304GGATGCCGACGCTGACGCCGATGCTGACGCTGATGCGGATGCCGACGCTGATGCGGATGCTGACGCTGATGCTGACGCCGATGCTGACGCTGATGCCGACGCCGATGCDesign primers
2933434GCTGATGCTGATGCCGACGCTGATGCGGATGCGGATDesign primers
2933482GCCGACGCTGATGCTGACGCCGATGCTGACGCCGATDesign primers
2933519CGGATGCTGACGCTGACGCCGATGCTGACGCCGATGCGGATGCTGACGCCGACGCCGACGCTGATGCTGACGCTGATGCTGATGCTGATGDesign primers
2933610TGACGC-TGACGC-CGATGC-TGATGC-TGACGC-CGACGC-TGATGC-TGACGC-TGATGC-TGATGC-TGATGC-TGATGCDesign primers
2933683GATGCCGACGCT-GATGCCGACGCT-GATGCTGATGCTDesign primers
2933731GACGCTGATGCCGACGCTGATGCGGATGCCGACGCTGATGCGGACGCCGACGCTDesign primers
2933797GATGCG-GATGCC-GACGCT-GATGCT-GACGCC-GATGCT-GACGCT-GATGCG-GATGCT-GATGCT-GATGCT-GACGCTDesign primers
2933870ACGCCGACGCTGATGCGGATGCCGACGCTGATGCGGATGCCGACGCTGATGCGGACGCTGATGCTGATGCTGDesign primers
2933943TGCGGATGCCGACGCTGATGCTGATGCTGATGCTGACGCCGATGCTGACGCTGATGCGGATGCTGACGCCGATGCGGATGCGGACGCTGATGCGGATGCCGACGCTGATGCGGATGCCGACGCTGATGCTGATGCTGATGCTGADesign primers
2934166GCTGAT-GCGGAT-GCCGAC-GCTGAT-GCGGAC-GCTGAT-GCCGAC-GCTGAT-GCTGAT-GCTGAT-GCGGAT-GCGGATDesign primers
2934281CCGATG-CGGATG-CCGACG-CCGATG-CGGATG-CTGACG-CCGATG-CCGATG-CGGATGDesign primers
2934346GCCGATGCGGATGCGGATGCCGATGCCGACDesign primers
2934733GATGCCGACGCTGATGCG-GATGCCGACGCTGATGCG-GATGCGGATGCCGATGCGDesign primers

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