Microsatellites /Tandem Repeats database

Genome: Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
62671TGGCGCCGCTGGCGCTGCTGGCGCTGCDesign primers
104828GCGCCCGGCGCGCCAGGCGCGCACGGCDesign primers
197661TTTCTTGTTCTTTTTGTTGTTCTTDesign primers
723790GAGAGTTCAGTAGAGTTCGGTGGAGTTCAGDesign primers
986819CACCACCACCATTACCACCATCACDesign primers
1055094TTT-TAA-TTA-ATT-TAA-TTA-TTT-TTA-TTADesign primers
1186484GGCGAGATGGATCATGGCAACATGGATCACAGCGGGATGAATCATDesign primers
1233559CGGCGGTAACGGCGGCAACGGCGGTCADesign primers
1332233CGAGTTAGG-AGATGTAGG-AGATGTAGG-AGATGTAGG-AGATGTAGG-AGATGTAGGDesign primers
1372742TGCTATCGCTATTACTATTGCGATDesign primers
1497323GCGAAAGAGAAAGCGGAAGCGGAADesign primers
2121298GCGGCAGCCGCATCGGCAGCCGCADesign primers
2121529GCGGCAGCCGCATCGGCAGCCGCADesign primers
2145618CCGGAG-CCGGTG-CCGGTG-CCGGAGDesign primers
2261484ACGAAAAATAACCAGAAATAACAAAAAACADesign primers
2852851CGGTTT-CGGTTT-CGGCTT-GGGTTTDesign primers
3378861GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
3595878ACGCCGTCGCACGCCGCCTCACGCAGTTGCDesign primers
3683443CGTTGGCGCTGGCGTTTGCGTTTGDesign primers
3756507ATCAAT-AGCAAG-GGCAAG-GGCAAG-GGCAAG-GGCAAG-GGCAAG-GGCAAG-GGCAAG-GGCAAG-GGCAAG-GGCAAGDesign primers
3761898GCTGCGGCTGCCGATGCGGCTGCCDesign primers
3762128CGCTGCGGCTGCCGATGCGGCTGCDesign primers
3794189GCCGTTACCTGATTCGGGTAAACT-TTTCTTACCTGATTCGGGTAAACT-TTTCTTACCTGATTCGGGTAAACTDesign primers
4054056TATGGGTTTATGTGAGTTTATAAGGGTTTTDesign primers
4145328GTTGTGATGTTGTGTTGTTGTGTTDesign primers
4194483ACCACC-ATCACG-ACCACG-ACCACG-ACCACG-ACCACGDesign primers
4454711CGCGCGACCGGCGCGACCCGCACGACCDesign primers
4478163TCGCTT-TCGCTT-TCTCTT-CCGCTTDesign primers
4478930TCGCCGCCGTCGCCGCCATCACCGCCGDesign primers
4671364CGC-AGC-AGC-AGC-AGC-AGC-AGC-AGCDesign primers

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