Microsatellites /Tandem Repeats database

Genome: Bacillus amyloliquefaciens subsp. plantarum UCMB5033

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
237048GAAAATGTGAAAACGTGAAAATATDesign primers
559348AGAAGCGAGAGCCAGAGCGGAAGAAGCAATAGCAAGGGCGGAAGAAGCAAGAGCCAGAGCAGCDesign primers
640853CATGGGCGG-CATGGGCGG-TATGGGCGGDesign primers
748376CGGCGGCTATGGCGGCTACGGAGGCTADesign primers
748535TGGCGGCTA-TGGCGGCTA-CGGCGGCTADesign primers
794185CACCGGAGCAACGGGGCT-GACCGGAGCAACAGGGCT-GACTGGAGCAACGGGGTT-CACTGGAGCAACGGGGTT-CACTGGAGCAACGGGGCT-GACTGGAGCAACGGGGTTDesign primers
794391TAACAGGAGCAACCGGGGTAACGGGGGCAACTGGGGTAACAGGCGCTACCGGAGDesign primers
794474ACCGGAGTA-ACCGGAGTA-ACCGGAGCADesign primers
794990GGCATAACCGGAGCGATTGGAGTAACCGGAGCGATTGGAGTAACCGGAGCGACTDesign primers
795142CGGCGCCACCGGAGTAACGGGAGCCACGGGAGTAACAGGCGCTACCGGAGTAACDesign primers
795224GGAGTAACGGGAGCCACCGGGATAACGGGAGCCACGGGAGTAACAGGCGCTACCGGAGTAACAGGAGCAACCDesign primers
795319AACAGGGATAACGGGAGCGACAGGAATAACAGGAGCAACCGGGATCACCGGAGCGACAGGAATAACGGGATCDesign primers
795489TAACGGGAGCCACCGGAGTAACCGGAGTAACCGGAGTAACGGGATCAACTGGAGTAACAGGAGCCACCGGAGTAACAGGAGCGACCGGAGDesign primers
865669AAAAAGTGAAAAAGAGAAAAACTGDesign primers
950024GCTGCTGCTGATTCTGCTGCTGTTDesign primers
1180459CTTCTTTTTCTTCTTTTTCTTCTCDesign primers
1182496CGGCGGCTACGGCGGTTACGGCGGCTGCGGCGGATADesign primers
1271097TTATCTTTTTTTCTTTTTATCATTDesign primers
1346839TTCTTTATCTTTTTCCTTGTCTTTDesign primers
1402767AATAAAATAGTAAAATGATAAAATDesign primers
1688728AACAACAACAACAAAAACAAAAACDesign primers
1820701CTTCCGACAAGCCCCCCGACAAGCCCTCCGACAAACDesign primers
1820768ACCCGCCAAACCAAGGGCGGCCAAACCAAGGCCGGCCAAACCAAGDesign primers
1863367GCATTTTTTACATTTTTTGCATTTTCTDesign primers
1873203GCAATGGCAGTGGGAATGGCAATTDesign primers
2074489ATATTTTGGTTATAATTTGATTACATTTTGATTDesign primers
2167642TCATTTTCATTCTCCTTTTCATTGDesign primers
2194739TTTTTAATTTTATTTTTATTCTTADesign primers
2234360AAGAACATAATAACATAAGAACACDesign primers
2423279TGTTTTTCTTTTTCTTTTCGTTTTDesign primers
2552357GTTTTTCTAGCATTTTCTAGGTTTTTCGACDesign primers
2933960GTTTCGCCTGTTTCGCATATTTCGCCTDesign primers
3241086TATTATATAACGTTATATAACATTATATAADesign primers
3774473GGGGAT-GGGGAT-GGGAAT-GGGAATDesign primers

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