Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Staphylococcus aureus subsp. aureus 55/2053

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
71259	TCCGTTGCCGTCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGTTTGTTGCCATCTTCTTTGCCAGG	Design primers
71356	TTTTTGTTGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTGCCAGGTTTTTTGTTGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTACCAGGCTTGTTGTTGTCTTCTTTGCCAGGC	Design primers
255822	TTAGTATTATTATTTGTATTATTA	Design primers
290442	GGTGCAAGTGCAGCTGCAGGTGCA	Design primers
407237	GG-AA-AA-TA-GC-AA-AA-TA-GA-AA-AA-TA	Design primers
511357	GACTCAGACAGTGATTCAGATTCAGATAGCGATTCAGACTCAGATAGCGATTCAGACTCAGACAGTGAATCAGACTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGAAAGCGACTCA	Design primers
511502	ATTCAGAAAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGAAAGCGACTCAGACTCAGACAGCGACTCAGATTCAGACAGCGACTCAG	Design primers
511642	TCAGATTCAGACAGCGACTCAGATTCAGAAAGCGACTCAGACTCAGATAGTGAC	Design primers
511697	CAGACTCAGATAGTGAATCAGACTCAGATAGCGATTCAGACTCAGAAAGCGACT	Design primers
511783	GACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGAATCGGATAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGTGACTCAGATTCAGACAGTGACTCA	Design primers
515846	TCAGAAAGCGACTCAGACTCAGATAGTGAATCAGACTCAGACAGTGATTCAGACTCAGACAGTGACTCAGACTCAGATAGCGATTCAGATTCAGAAAGCGACTCAGACTCAGACAGTGACTCAGATTCAGATAGCGATTCAGAC	Design primers
515991	CAGATAGTGATTCAGATTCAGAAAGCGACTCAGATTCAGAAAGCGATTCAGACTCAGATAGCGATTCAGACT	Design primers
516107	GACAGTGACTCA-GACAGTGACTCA-GACAGTGATTCA	Design primers
516152	AGCGATTCAGATTCAGACAGTGACTCAGACTCAGACAGTGACTCAGATTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGTGACTCAGACTCAGACAGTGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGAC	Design primers
519779	GACAGCGATTCAGATTCAGACAGTGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGACTCAGACAGTGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGATTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGACTCAGACAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGTGACTCAGATTCAGATAGCGACTCAGACTCAGACAGTGACTCAGACTCAGATAGCGACTCAGATTCAGACAGTGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGATTCGGATAGCGACTCAGATTCA	Design primers
566254	AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AA	Design primers
600328	TAAAGATATTTAAATATTTTTAAAGTTATC	Design primers
609309	AAAATTAATATTAAAAATAAAAAT	Design primers
757563	TAGTGGTTCAGATTCAGCGAGCGATTCAGATTCAGCAAGTGATTCAGATTCAGCGAGTGATTCAGATTCAGCAAGTGATTCAGATTCAGCGAGTGATTCAGATTCAACGAGTGATTCAGATTCAACGAGTGATTCCGATTCAGC	Design primers
757744	AGCGATTCAGATTCAGATAGTGACTCAGACTCAGATAGCGATTCAGATTCCGACAGTGACTCGGATTCAGATAGCGATTCCGACTCAGACAGTGACTCAGATTCAGATAGCGACTCAGACTCAGAAAGCGACTCAGATTCAGACAGCGATTCCGACTCAGATAGTGATTCAGATTCAGAC	Design primers
757948	TCAGACAGTGACTCAGACTCGGATAGTGAATCAGACTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGAATCAGACTCAGACAGTGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGAC	Design primers
758149	GATAGCGATTCAGAATCAGATAGTGACTCAGATTCAGATAGCGATTCCGACTCAGATAGCGACTCAGATTCCGACAGCGATTCAGATTCA	Design primers
758311	GACAGCGATTCAGATTCAGACAGTGATTTAGACTCAGACAGTGACTCGGATTCAGATAGCGATTCCGACTCA	Design primers
758391	CTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGAATCAGATAGTGACTCAGATTCAGATAGCGA	Design primers
778157	AAAAGTATAAAAGTTTAAAAGAAT	Design primers
784686	TTGATAAAATTGAAAAAATTAATAAAA	Design primers
830264	TAATAATAATACTAGTAATAATTA	Design primers
954723	TAGGTGTTGGTGTAGGCGTAGGTT	Design primers
1032447	GCTTTAACTTCTTTAACTGCTTTAACT	Design primers
1160727	TATAGAATTATATAATTATAGAAA	Design primers
1279163	CTGCTTCTTCTTCGGCTTCTTCTT	Design primers
1345398	ATTTCAATTCATTTAGTTTCATGTC	Design primers
1487293	AATTAGTCCGAACTGTACGATGTGTCCGAACTGTACGATGTGTCCGAACTGTAC	Design primers
1492548	ATTATTAGTATTGTTATTATTAGT	Design primers
1492629	TCCGTTTTCCGAAAACCCGTTTGCCGATAATCCGTTTTCCGAAAA	Design primers
1689891	TTCTTTTTTTATCTTTTCTATTCTT	Design primers
1833489	TATAATTAAAATAATAATTAAAAT	Design primers
1834112	AATATAATTTAATAAAACATAATCT	Design primers
1916792	ACAATTTAATAAACTTTAATAGAATTTTAT	Design primers
1972373	ATATATACAATATACACAATATACACA	Design primers
2009710	TT-AT-CT-AT-AT-CT-TT-TT-CT-TT-AT-CT	Design primers
2033587	TCTGGATCTGGTTTTGGATCCGGA	Design primers
2033625	ATCTGGGTCTGGCTTTGGATCCGGATTTGGCTTTGGATCCGGATTTGGCTTTGG	Design primers
2033683	TCTGGGTCTGGCTTTGGGTCTGGC	Design primers
2188776	TATTTATTTTATATTGTTTTTATAGTTATTTCA	Design primers
2305933	AACTACAACGACTACAACAACTACGACAACTACATC	Design primers
2331159	ATCAGCATTTCTATGATCAGTACTTCTACGGTCAGCGTTTCTATG	Design primers
2357922	ACTTTATCACCTTTATCAAGTTTATCA	Design primers
2371588	TTTGTATTTTTATTTGTATTTCTA	Design primers
2392844	TTTAAATTAATTTTATGTAATATAA	Design primers
2655428	GAATCGCTGTCTGAATCTGACTCACTGTCTGAATCTGACTCACTGTCTGAGTCTGAATCGCTGTCTGAATCTGAGTCACTGTCTGAGTCTGAGTCACTGTCTGATTCTGAATCGCTATCTGAATCTGACTCACTGTCTGATTCTGAATCGCTATCTGAATCG	Design primers
2655591	AGTCACTGTCTGAGTCCGAATCGCTGTCTGAATCCGAGTCGCTATCTGAATCCGAGTCACTGTCTGAATCCG	Design primers
2655664	ATCGCTGTCTGATTCTGAATCGCTGTCTGAATCTGAATCGCTATCTGAATCCGAATCGCTGTCTGAATCTGA	Design primers
2655737	TCACTATCTGAGTCCGAGTCACTATCTGAATCCGAGTCGCTATCTGAATCCGAA	Design primers
2655792	CGCTGTCTGAATCTGACTCACTGTCTGAACCTGAGTCACTGTCTGAATCCGAAT	Design primers
2655869	TCTGAGTCCGAGTCACTGTCTGAATCTGACTCACTGTCTGAGTTTGAGTCACTATCTGAGTCCGAGTCACTATCTGAGTCCGAGTCACTGTCTGAGTCCGAATCGCTG	Design primers
2656043	TCGCTATCTGAATCTGAGTCACTATCTGAGTCCGAGTCACTGTCTGAATCTGAC	Design primers
2656115	TCACTATCTGAGTCTGAGTCACTATCTGAATCCGAATCGCTATCTGAACCTGAGTCGCTGTCTGAGCCTGAGTCACTATCTGAATCCGAA	Design primers
2668050	ATCTAATCCGAATCAATCAAATTCAAATCAATCAAATTCAAATCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

71259

TCCGTTGCCGTCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGTTTGTTGCCATCTTCTTTGCCAGG