Microsatellites /Tandem Repeats database

Genome: Bacillus amyloliquefaciens subsp. plantarum NAU-B3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
531581AGAAGCGAGAGCCAGAGCGGAAGAGGCAATAGCAAGAGCGGAAGAAGCAAGAGCCCGAGCAGCDesign primers
754810GGTGCAACAGGAACAACA-GGAGCAACAGGAACAACA-GGAACAACAGGAGCAACA-GGAACAACAGGAACAACADesign primers
754945GGTGTAACC-GGCCCAACC-GGCCCAACC-GGCCCAACC-GGCCCAACC-GGCCCAACCDesign primers
755526AACAGGAGCAACAGGCGCAACAGGAACAACAGGACCAACAGGCGCDesign primers
755840CAACTGGCTCAACCGGCTCAACTGGCGDesign primers
756382ACCGGTCCAACCGGAGCAACAGGTTCAATCGGAGCAACCGGCCCAACTGGGGCADesign primers
756902TAACTGGAGCAACTGGAGTAACAGGAGDesign primers
757055CAACCGGCTCGACTGGAG-CAACAGGGCCGACTGGAG-CAACAGGGCCGACTGGAG-CAACAGGGCCGACTGGAG-CAACAGGGCCGACTGGAG-CAACAGGGCCGACTGGAG-CAACAGGACCGACTGGAG-CAACAGGACCGACTGGAG-CAACAGGGCCGACTGGAG-CAACAGGACCGACTGGAG-CAACAGGACCGACTGGAGDesign primers
757465GGAGTAACAGGAGCAACAGGAGCAACADesign primers
757823CTGGAGCAACTGGAGTAACTGGAGTAADesign primers
758165CTGGAGCAACTGGAGTAACTGGAGTAADesign primers
758450CAACTGGCGCGACTGGCGCAACTGGGGDesign primers
758725GGTATAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACADesign primers
758801CAACGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGC-AACAGGAGCDesign primers
758928ACAGGAGTAACTGGAGCA-ACAGGAGTAACTGGAGCA-ACAGGAGTAACAGGAGTADesign primers
759872TTCACCGGAGCAACGGGGGGCACCGGAGCAACGGGGCTGACCGGAGCAACAGGGCTGACCGGAGCAACCGGGTTCACTGGAGCAACGGGGTTTACCGGAGCAACGGGCDesign primers
759992ACCGGAGCGACTGGGGTAACCGGCGCCACCGGGGTAACGGGGGCAACTGGGGTADesign primers
760269CGACCGGTGTAACCGGGGCGACCGGAGTAACGGGAGCAACCGGGGTAACCGGAGDesign primers
760571GGAATAACCGGTGCCACCGGGATAACGGGAGCCACCGGAGTAACAGGGGCCACCDesign primers
760639AACCGGAGTAACGGGAGTAACCGGAGADesign primers
760694ACCGGAGTAACGGGAGTAACGGGAGTADesign primers
760765AACCGGAGTAACGGGAGTAACCGGAGADesign primers
760820ACCGGAGTAACCGGAGCAACCGGGGTADesign primers
760952GTAACGGGCTCGACCGGAGAAACAGGCTCGACCGGTGTAACCGGGGCGACCGGADesign primers
761036ACCGGAGTAACGGGAGTAACGGGAGTAACCGGAGCAACCGGAGTAACCGGAGCADesign primers
761102GGAGCCACCGGAGTAACCGGCGCCACTGGAGCAACCGGGGTAACCGGAGTAACCDesign primers
761169TAACCGGAG-CAACCGGAG-CAACCGGAGDesign primers
847170AAAAAGTGAAAAAGAGAAAAACTGDesign primers
1113645TA-AA-GA-TA-AC-GA-AA-AA-GA-TA-TA-GADesign primers
1381801GAAAAACCTAGAAAATGCTAGAAAAACAAADesign primers
1479894AAACCGAAACTGAAATCGAAAGCGDesign primers
1702003TGTTCTTATGTTATTATGTTCTTCDesign primers
1712910TTTTTTGTTTTTTGGTTTTTATGTDesign primers
1838354TATAGATACTTATAAATACATGTAGATATTCATAGATACGDesign primers
1877153TTAATCAAAATGTAATCAAATTATAACCAAAATDesign primers
2092189ATTGCCATTCCCACTGCCATTGCADesign primers
2101807GGTATGGATATGGGTATGGATATGDesign primers
2571249TATTATTTTATCATTTTACTATTTDesign primers
2646298TTTTTCTTCTGTTTTCTTTTCGTTTCTTCTDesign primers
2797457AGAAGAAAAAGAAGAAAAAGAAGGDesign primers
2808220CTTTATTTCTTTAATTCTTTTTTTDesign primers
3150206TTTTATTTTTACTCTTATTTTTAGDesign primers
3322788TATTATATAACGTTATATAACATTATATAADesign primers
4048397AAAGGTTGA-ACAGGTTGA-ACAGGTTGA-ACAGGTTGADesign primers

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