Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes EGD

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
86414AAACAGCAAAAGAAACGGAAAAAGAAACAACAAAAGDesign primers
153648CACATTAGTACCACCAACACCAGTACCACCAACACCAGTACCACCDesign primers
186070TCATCATCGTCATCAGCATCATCADesign primers
569741CAGATCCAGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGDesign primers
692637TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
758766TCTTCCG-TTATCCG-TTATCCG-TTATCCG-TTATCCG-TTATCCGDesign primers
773079AA-AA-AA-TA-AA-AA-AA-GA-AA-TA-AA-TA-ADesign primers
938324AGAACAAAAACAACAACAAGAAAADesign primers
970683AAAAAGAAGAAGAAAACGAAACAGDesign primers
1041533ATAAA-ATAAA-CTAAA-ATAAA-ATATADesign primers
1111105ATAAAAGAAATAAAACAAATACAAGAADesign primers
1130193ACTCCAGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCAGTA-GACCCGGTADesign primers
1130293ATCCAGTAA-ATCCGGTAA-ACCCGGTAA-ACCCGGTAA-ACCCGGTAA-ACCCGGTAADesign primers
1643324ATTAGCAATAGCATTATCATTATCDesign primers
1648486GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1869999CATCCG-CATCAG-CGTCAG-CATCAG-CATCGG-CATCAGDesign primers
1870037TCAGCATCCGCATCCGCATCAGCGDesign primers
1870415TCTACATCGGCATCCGCGTCGGCATCCGCATCGGCATCAGCGTCAGCATCCGCATCTGCATCCGCGTCCGCATCCGCATCTGCATCCGCGTCAGCATCCGCATCCGCATCAGCGTCGGCADesign primers
1870536CCGCAT-CCGCAT-CAGCAT-CCGCAT-CGGCAT-CCGCGT-CAGCAT-CCGCAT-CGGCAT-CCGCAT-CAGCAT-CCGCGT-CAGCAT-CCGCGTDesign primers
1870639CGCATC-CGCATC-GGCATC-CGCATC-CGCATC-GGCATC-CGCATC-GGCATC-CGCATC-AGCGTC-AGCATC-CGCATCDesign primers
1918411TGAATTATTTAATTATTGATTTATDesign primers
2347771CAGAATCAAAATCATAATCAGAAGDesign primers
2369898TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2601539CTAATTCTGATTCTAATTGTAATTDesign primers
2735384CACTAA-CACTAA-CACGAA-CGCTAADesign primers

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