Microsatellites /Tandem Repeats database

Genome: Campylobacter coli 15-537360

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
15601AAGGATGAAAAAGAATTAAAAACGATGATADesign primers
73183GCACACGCACAGGCAAACGCACATDesign primers
219573AATTTTAATTTAACTTTTAAATTTDesign primers
273856GATTTAAAATATTTTAAAATCACTTAAAATDesign primers
296132TAAATTTTTAAAATTTTCAATTTTDesign primers
298373TTAATAATAATTAATAAAAATTATTATTAADesign primers
318107TTTAGCTTTTGTAGCTTTTGTAGCTTTDesign primers
340235TTTTTATATAATTTTATCTAATTTTATAAADesign primers
342954TTTTAATTTTACCTTTAATTTTACDesign primers
351653GTTTTAAAATTTTTTATAATGTTTTACAAGDesign primers
368563TTTTCA-TTTTCA-TTTGCA-TTTACADesign primers
526166ATATAAAGGAAGATAAATGAATATACATGAATATCAAGCADesign primers
581018AAGACATAAAAAATACATAAATAAAAGATAAAADesign primers
625202AATTTTAATTTGGATTTTAATTTADesign primers
658421AAATA-AAATA-ATATA-AAATA-AATTADesign primers
676538AAAAAATGAAAAAATTAAAAAGTGDesign primers
727766AAGAATTAATAATAATTATTAAGATATAATDesign primers
765690TT-TT-TT-TT-GT-TA-TT-TT-TG-TT-TT-TA-TDesign primers
794979TTTGATATTTTCGTTTTTGATAAGCTCGTTTTTAATATTTTCATTTTTAATGTTTTCTTTDesign primers
802254CACGATCATGATCACGATCATGATDesign primers
822380ATATAATTTATATTATTTAAATAATTTDesign primers
822413AAAAT-AAAGT-AAAAT-AAAAT-AAATTDesign primers
831301AAAAAAAAGAAAAATAAACAAAATADesign primers
870795ATTTTTAATTTTTATTAATTTTTTTTAAATDesign primers
876292TTATTTTTAGTTTTAATTTTATTADesign primers
920606TTTTTTGTATTTTTAATTATTATATTTTTATTTATTGTATTTATGDesign primers
928521ACCAAAACCAATCCCAAAACAAAADesign primers
933259AA-TA-AA-AA-GA-AA-AA-TA-TA-CA-TA-AADesign primers
933600TAAAATTCACATAAATTCACTAAAATTTAGDesign primers
947749TTTTTTTGTTTTTTATTTTTCTTTTDesign primers
1003001ACTACAGCATCTACTCCAGCTTCTACCAAAGCATCTDesign primers
1077313TCATTTTTCATCATTTTTAACCTTTTTTCADesign primers
1155897AGCCAAATTTACTCAAATTTAGACATATTTDesign primers
1156393AAGCAAAAGCGAAAGCAAAAGCTADesign primers
1236607CAAAATCCAAATGAAAATCAAAAADesign primers
1259765TTT-CTT-CTT-CTT-CTT-CTT-CTT-CTTDesign primers
1287518AATTTAAACAAATTTTAAAAAATTTTAAAADesign primers
1313836GAAAAATTTTCAAAAATATTTAAAAATGTTDesign primers
1389005CAAAAATA-TAAAAATA-TAAAAATADesign primers
1457543TTTAAAAAATGTATAAAAAAAGATTAAAAAAAGDesign primers
1463508TT-TT-TA-AT-TT-TA-TC-TT-TA-TT-TT-TTDesign primers
1464520AAATTTAAAAATATTAAAAAAAATTAAAAADesign primers
1473021AAAAAATTTAAAAGAATTAAAAGAAATTTTDesign primers
1501159TAAATTTTTTAAAAATTTATTATAAATGTTATADesign primers
1556946TTTATAATTATAGTTATAATTATADesign primers
1561066AAATGTTAAAAAATATGAAAAAATTTTAAADesign primers

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