Microsatellites /Tandem Repeats database

Genome: Pandoraea pnomenusa 3kgm

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
39990GCATATCGCG-GCATATCGCG-GCATATCGCGDesign primers
119286GCAGGGGCG-GCAGGGGCG-GCAGGGGCGDesign primers
267192GAGGTCGAG-GAGGTCGAG-GAGGTCGAGDesign primers
296844GGGGGCAC-GGGGGCAC-GGGGGCACDesign primers
358576GGCCGGTGT-GGCCGGTGT-GGCCGGTGTDesign primers
588677ACGTCTGAT-ACGTCTGAT-ACGTCTGAT-ACGTCTGAT-ACGTCTGATDesign primers
606664GCTTCAGGCGG-GCTTCAGGCGG-GCTTCAGGCGGDesign primers
649002GACGAATCC-GACGAATCC-GACGAATCCDesign primers
685940GTACGAGCG-GTACGAGCG-GTACGAGCGDesign primers
726372CCGCCCGAT-CCGCCCGAT-CCGCCCGAT-CCGCCCGAT-CCGCCCGATDesign primers
727317TCGTTG-TCGTTG-TCGTTG-TCGTTGDesign primers
733256GCCACGACCCTC-GCCACGACCCTC-GCCACGACCCTC-GCCACGACCCTCDesign primers
790110CGGGAAAGG-CGGGAAAGG-CGGGAAAGG-CGGGAAAGG-CGGGAAAGGDesign primers
790156GGGAAGGAC-GGGAAGGAC-GGGAAGGACDesign primers
891377GAAGGAAGCGG-GAAGGAAGCGG-GAAGGAAGCGG-GAAGGAAGCGG-GAAGGAAGCGGDesign primers
899152CGCCCATCACC-CGCCCATCACC-CGCCCATCACCDesign primers
969965CGCAAAGGA-CGCAAAGGA-CGCAAAGGADesign primers
1068241GTTCGATTT-GTTCGATTT-GTTCGATTTDesign primers
1207950TCACCAGC-TCACCAGC-TCACCAGC-TCACCAGCDesign primers
1209518GAGTCGGGG-GAGTCGGGG-GAGTCGGGG-GAGTCGGGG-GAGTCGGGG-GAGTCGGGG-GAGTCGGGGDesign primers
1249299CCGTTTGCA-CCGTTTGCA-CCGTTTGCA-CCGTTTGCADesign primers
1298503ACGCCTCTCC-ACGCCTCTCC-ACGCCTCTCC-ACGCCTCTCCDesign primers
1336065GCGACTTC-GCGACTTC-GCGACTTCDesign primers
1348350GGACACGACA-GGACACGACA-GGACACGACADesign primers
1394976GAGAAACGAC-GAGAAACGAC-GAGAAACGAC-GAGAAACGAC-GAGAAACGACDesign primers
1402019GATGTCCGCGT-GATGTCCGCGT-GATGTCCGCGTDesign primers
1428991GGGCGTGGT-GGGCGTGGT-GGGCGTGGTDesign primers
1688870AACTGCCGG-AACTGCCGG-AACTGCCGGDesign primers
1723361CGTGTGG-CGTGTGG-CGTGTGG-CGTGTGGDesign primers
1744522GAGCGCCT-GAGCGCCT-GAGCGCCT-GAGCGCCTDesign primers
1820925GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGTDesign primers
1820976GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGTDesign primers
1936289GCCGGTTAGAG-GCCGGTTAGAG-GCCGGTTAGAGDesign primers
1945858GCCTGAGC-GCCTGAGC-GCCTGAGCDesign primers
1964391TCGCGACA-TCGCGACA-TCGCGACA-TCGCGACADesign primers
1964427GACATCGC-GACATCGC-GACATCGCDesign primers
2037487GCACGATGG-GCACGATGG-GCACGATGG-GCACGATGGDesign primers
2217989AATACGGCA-AATACGGCA-AATACGGCA-AATACGGCADesign primers
2218039GCGAGACG-GCGAGACG-GCGAGACGDesign primers
2233306ATCTCCTCC-ATCTCCTCC-ATCTCCTCC-ATCTCCTCCDesign primers
2245442CGTCCGATA-CGTCCGATA-CGTCCGATA-CGTCCGATA-CGTCCGATA-CGTCCGATADesign primers
2257946CGCGATCAT-CGCGATCAT-CGCGATCATDesign primers
2260725AGCGGGTGGCA-AGCGGGTGGCA-AGCGGGTGGCADesign primers
2612891TCCTATCCG-TCCTATCCG-TCCTATCCG-TCCTATCCGDesign primers
2715005GGCGAAGGGT-GGCGAAGGGT-GGCGAAGGGTDesign primers
2757427CTCTTCCCG-CTCTTCCCG-CTCTTCCCGDesign primers
2792301TCACGGAT-TCACGGAT-TCACGGAT-TCACGGATDesign primers
2825744CCCTAGC-CCCTAGC-CCCTAGC-CCCTAGC-CCCTAGC-CCCTAGCDesign primers
2825800GCCATTGG-GCCATTGG-GCCATTGGDesign primers
2933422TTCCGCTTG-TTCCGCTTG-TTCCGCTTG-TTCCGCTTGDesign primers
2966830CGACGAG-CGACGAG-CGACGAG-CGACGAG-CGACGAGDesign primers
2983016ACTCAGGCA-ACTCAGGCA-ACTCAGGCADesign primers
2994016GCCGAACGT-GCCGAACGT-GCCGAACGTDesign primers
3105631CGGCCTTCA-CGGCCTTCA-CGGCCTTCADesign primers
3112945GGCGCTGCC-GGCGCTGCC-GGCGCTGCCDesign primers
3247596CTCCGTT-CTCCGTT-CTCCGTT-CTCCGTTDesign primers
3315002CGGGTGACA-CGGGTGACA-CGGGTGACA-CGGGTGACA-CGGGTGACADesign primers
3350102GCAGCG-GCAGCG-GCAGCG-GCAGCG-GCAGCGDesign primers
3401181TCCCCCGCT-TCCCCCGCT-TCCCCCGCT-TCCCCCGCTDesign primers
3482890TTCGTCAT-TTCGTCAT-TTCGTCAT-TTCGTCATDesign primers
3545025CTTCCGGCA-CTTCCGGCA-CTTCCGGCA-CTTCCGGCADesign primers
3608506CGGCGGAAG-CGGCGGAAG-CGGCGGAAGDesign primers
3766595GGCACCCTC-GGCACCCTC-GGCACCCTC-GGCACCCTCDesign primers
3768617TGGTTGTCT-TGGTTGTCT-TGGTTGTCT-TGGTTGTCTDesign primers
3771030CGCTATCC-CGCTATCC-CGCTATCC-CGCTATCCDesign primers
3800134CCCCCCTG-CCCCCCTG-CCCCCCTGDesign primers
3845891CGATTTCGA-CGATTTCGA-CGATTTCGADesign primers
3845975CTTGTCCGT-CTTGTCCGT-CTTGTCCGT-CTTGTCCGT-CTTGTCCGT-CTTGTCCGT-CTTGTCCGT-CTTGTCCGT-CTTGTCCGT-CTTGTCCGTDesign primers
3866109CGACGCCTTT-CGACGCCTTT-CGACGCCTTTDesign primers
3910169CGAACGGTG-CGAACGGTG-CGAACGGTGDesign primers
4002883TGGCGCT-TGGCGCT-TGGCGCT-TGGCGCTDesign primers
4201128TGGTGGCCT-TGGTGGCCT-TGGTGGCCT-TGGTGGCCTDesign primers
4248143ACGGCATC-ACGGCATC-ACGGCATC-ACGGCATC-ACGGCATCDesign primers
4296792CTTCGTTGCG-CTTCGTTGCG-CTTCGTTGCGDesign primers
4486065CGCTGCTCGT-CGCTGCTCGT-CGCTGCTCGTDesign primers
4519359CTGAGGCTCGA-CTGAGGCTCGA-CTGAGGCTCGADesign primers
4586207GCCGGATAC-GCCGGATAC-GCCGGATACDesign primers
4597775CGCCATATCG-CGCCATATCG-CGCCATATCGDesign primers
4614962GCCACACCA-GCCACACCA-GCCACACCADesign primers
4636528CCCATGAGG-CCCATGAGG-CCCATGAGGDesign primers
4666298TCGGGCGCT-TCGGGCGCT-TCGGGCGCT-TCGGGCGCT-TCGGGCGCTDesign primers
4720113GTTGCTGTTCGTA-GTTGCTGTTCGTA-GTTGCTGTTCGTA-GTTGCTGTTCGTADesign primers
4833058CACCGCCC-CACCGCCC-CACCGCCCDesign primers
4849665AAGGGA-AAGGGA-AAGGGA-AAGGGADesign primers
4931019CACACCCGA-CACACCCGA-CACACCCGADesign primers
4939089CGGTGCAAA-CGGTGCAAA-CGGTGCAAA-CGGTGCAAADesign primers
5009439CCATAACG-CCATAACG-CCATAACGDesign primers
5077913CGGCGATTTA-CGGCGATTTA-CGGCGATTTADesign primers
5089464GTGGTC-GTGGTC-GTGGTC-GTGGTC-GTGGTC-GTGGTC-GTGGTCDesign primers
5133647GGGGTGAGAAGCC-GGGGTGAGAAGCC-GGGGTGAGAAGCC-GGGGTGAGAAGCCDesign primers
5221844GGCGCTGCG-GGCGCTGCG-GGCGCTGCGDesign primers
5293804CCTCACACGT-CCTCACACGT-CCTCACACGT-CCTCACACGT-CCTCACACGTDesign primers

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