Microsatellites /Tandem Repeats database

Genome: Shigella dysenteriae 1617

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
67454CTGGCGGTGGCGCTGTCGATGGCGDesign primers
93828GCAGCAACAGCAGCAGCGCCAGCADesign primers
164272TCACCC-TCACCC-TAACCC-TCTCCCDesign primers
313522TATGCATC-GACGTATC-GACGTATC-GACGTATC-GACGTATC-GACGTATCDesign primers
379736GCAGCACCAGCAGCAGCGCCAGCADesign primers
639396AAAGCAGCGGCAGAAAAAGCCGCTGCAGCAAAAGCTGCCGCAGAGDesign primers
858982GCGTCGCGAGCGTGGCGAACGTCGCGADesign primers
906307ATTGGGATTGTGATTGGCATTGCGDesign primers
1066356CTTGCTTTAGTTGTTCTTGCTTTAGTTTTCCTTCCTTTATTTTTTDesign primers
1663459AGCGTTA-TGCGTTA-TGCGTTA-TGCGTTADesign primers
1719193TTACCAA-TCACCAA-TCACCAA-TCACCAA-TCACCAADesign primers
2021537CGCAG-CAAAG-CAAAG-CAAAG-CAAAG-CAAAGDesign primers
2031914CAAGAC-CACGAC-CACGAC-CACGACDesign primers
2129264TCATCTTCATATTCATCTTCATCGDesign primers
2283141ACGGAACAGATCGGAACGAATCGGADesign primers
2394365CCCTCA-CCCTCA-CCCTAA-CCCTCTDesign primers
2542190TCGGGTCTGGTTTCGGATCCGGTTTTGGGTCTGGTTDesign primers
2655538CCAGCG-CCCAGC-CCCAGC-CCCAGC-CCCAGC-CCCAGC-CCCAGC-CCCAGC-CCCAGC-CCCAGC-CCCAGC-CCCAGCDesign primers
2751830GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3213025GCTACGGCGTGGGCGACAGCGTGGGCCTCGGCGTGGDesign primers
3214032TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
3715160AAGTAAA-AAATAAA-AAATAAA-AAATAAADesign primers
3724647CCCCTCCCCCTAACCCTCTCCCTCDesign primers
4101374ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers

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