Microsatellites /Tandem Repeats database

Genome: Methanobacterium sp. MB1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
82670CTAATTTTTTCTATTTTTTTCTTCTTTTTTDesign primers
135259AAGAATATTAAAGAATTTTTAATTATATTADesign primers
153033AAGATATATCATAATTTTATATATCATAATCAGATATAACATAATDesign primers
153827ATAAATTAAAATAAGTTAAAATAAGDesign primers
338159GTCTAGTGGTTCTTGGTTTTCTAGTGCTTCATGGTTTTCTAGTGGTTCTTGGTTDesign primers
431600CAGCTTCTTCTTCAGCTTCTTCCTCTTCTTCTTCCTCTTCTTCAGCTTCTTCTTCAGCTTCTCDesign primers
431664AGCTGCAGCTGGGGCTGCGGCTGCDesign primers
432009TCCTCTTCCTCGTCTTCTTCCTCTDesign primers
432034CTTCCTCTTCTTCTACCTCTTCTTDesign primers
503792AATTT-ATTTT-AATTC-CATTT-AATTT-AATTTDesign primers
603595CACTACCAATACCACTAACACCACDesign primers
633714AATTATAAAT-AATTATAAAT-AATGTTAAATDesign primers
679825TATTTTATTGTCTTTTCTTTTAATTDesign primers
751539GCAGAAACTGCAGAGACTGCAGAATCTDesign primers
765879GAAAACCCTAAAAAGGAAAAACCAAAGAAGGAAAAACCAAAAAGGDesign primers
918344TAATACTCAGACCAATACCCAGACTAATACGCAGACDesign primers
1032068TATTATTAATCATTATAAATTATGATTAATCATTATAAATDesign primers
1092657AATTAATGATTAATAATGATAATTAAGGAGDesign primers
1141044AAATT-AAATT-AAGTT-AAATC-AATTTDesign primers
1180521CCAGAAAAGAACAGAAAAGGCCTTAAAAGADesign primers
1408205AGTACTGTAAATTATTGTAATGTACTGTATDesign primers
1421392GCTGGTTCAGGAGCTGGTGCTGGAGCTGGTGCTGGADesign primers
1458309TTTTAATTTTATTGTTAAATTTAADesign primers
1620273GTCTAAAGAAACGTCCCCTAAAGAAACATCCCCTAAAAAAACGTCDesign primers
1659292CTTCTTCTTCATCTCCTTCTCCTTDesign primers
1694687AAAAAGAATAAAAAATGATAAAGAATAATADesign primers
1813735TTAGGAGAAAAGTCCTTTTTCTCTGAGAAAAGTCCTTTTTCTCATAGAAAAGTCCTTTTTDesign primers
1816154GATGATATGAAAGAGGATATTAAAGATGCTAAGAAADesign primers
1835751TGAAGTGGAAGTAGAAGTTGAAGADesign primers
1854145CAATTAAATTCAATCCAAATGAATTDesign primers
2002113ACTTATAACTTGTAACTTATTACTTATAAGTTATAACTTATADesign primers

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