Microsatellites /Tandem Repeats database

Genome: Paenibacillus larvae subsp. larvae DSM 25430

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
27961GATCAGGACCAGGATCAGGATCAADesign primers
30092GATCAAGACCAAGATCAAGATCAADesign primers
30294CAAGATCAGGATCAAGACCAAGATCAAGATDesign primers
109354AGAAGATTCTAAAGCACCTGAAGATCTTAAAGCACCTGAAGATCTTAAAGCACCDesign primers
162962ATTTGATTTTGAATTTGGATTTGADesign primers
175847CGTTATTAGCCTTTATTAACCTTTATTAGTDesign primers
180534TTTCTTTCTCTTTTTCTATTTCCTDesign primers
240434TGGAGCGCTAATTGGAGCGATTATCGGAGCGCTAATDesign primers
378763CATGGGCGGCATGGGTGGAATGGGCGGDesign primers
399507TTTATATAGCCATATCCTC-TTCAATTAGCCATATCCTC-TTCAATTAGCCATATCCTC-TTCAATTAGCCATATCCTC-TTCAATTAGCCATATCCTCDesign primers
422121GTATAATTTTGTATATTATTTTATAAATTTDesign primers
689991AGGCCCTTGAGGTCCTTGAGGCCCTTGDesign primers
690027AGCGCCTTGAGGTCCTTG-ATCACCTTGAGGTCCTTG-GTCACCTTGAGGTCCTTG-GTCGCCCTGAGGTCCTTGDesign primers
690117AGCGCCTTGAGGTCCTTGATCACCTTGAGGTCCTTGGTCACCTTGAGGTCCTTGDesign primers
690198AGCGCCTTGAGGTCCTTGATCACCTTGAGGTCCTTGGTCACCTTGAGGTCCTTGDesign primers
690279AGCGCCTTGAGGTCCTTGATCACCTTGAGGTCCTTGGTCACCTTGAGGTCCTTGDesign primers
690408ACCTTGAGGTCCTTGGTCACCTTGAGGCCCTTGATCGCCCTGAGGTCCTTGATCACCTTGAGGCCCTTGGTTACCTTGAGGTCCTTGATCACCTTGAGGTCCTTGATCDesign primers
690570ACCTTGAGGTCCTTGATCACCTTGAGGCCCTTGATCGCCCTGAGGCCCTTGATCDesign primers
824166AGGACC-AGGACC-AGGAGA-AGGACC-AGGACC-AGGACCDesign primers
833277AAATTGTATTGTAACGAAATGTACTGTAACGGATTGTATTGTAGCDesign primers
1023908AACCT-AACCT-AACCA-TACCT-AACCTDesign primers
1036180ATATAAAATTATAAAAATAAAAAADesign primers
1047103AATAATCTGCCAAATAATTTGTCAAATGATTTGCCADesign primers
1049903ATATATATAAATAGATATATATAADesign primers
1082787AAACAA-AAACAA-AAAGAA-AAACACDesign primers
1094209TT-TG-TT-TT-TG-CT-TT-TG-TC-TT-TT-TTDesign primers
1245424TGTACTTTTCCTGTATTTTTCTTGAACTCTTCCDesign primers
1628042GGAGGG-GAAGGG-GAAGGG-GAAGGGDesign primers
1707450CTGCTCCTGCTACTCCTGCTGCCCCTGDesign primers
1857451CGATTTGTTCTATTTGTTCTATTTGTTDesign primers
1936439TTCACCTTCCCCTTCAGCTTCAGCDesign primers
1953353ATTTG-ATTTG-ATTTT-ACTTG-ATTTGDesign primers
1987153TTTTTTGGTTCTTTTGGTGTTTTTGGTDesign primers
2126113GATTGGACG-GATTGGACG-GATTGGGCGDesign primers
2381279ATATGTTAATAGGTTAATATATTADesign primers
2397737CTGGTT-CTGGTT-CTGATT-TTGGTTDesign primers
2528229TGCAAAGTGGATTTGGACAAATTGGATTTGGACAAATTGGATTTGDesign primers
2595921TTCGTCCCCAA-TTCGTCCCCAA-TTCGCCCTCAADesign primers
2718003AATGGTCCATCTATGGTCTATCTATGGTCCATCDesign primers
3020400TCTTTCTTCTTCTTCCTTCCCCTGTCTTCTDesign primers
3280155TCTTTTTATATTTTTATCTTTTTADesign primers
3332443ATAGCCACCGCTCCTATAGCCACCTTGCCTATAGCTACGGCTCCADesign primers
3351166ACTTTTATAT-ACTTTTATAT-ACTTTTTGATDesign primers
3429300GGCGGTTGGCATGATGGCCATCACGGAGGTTGGCATGGTGGTCACCACGGAGGTTGGCATGATGGCCATCACDesign primers
3429373GAGGTTGGCATGGCGGTCACCACGGAGGTTGGCATGATGGCCATCACGGAGGTTGGCATGGCGGCCACCACTDesign primers
3634836ATTTGTGATTATTTATAATTGTTTGTGATTGTTTGTGATTDesign primers
3709905TTGAAT-TTGAAT-TTAAAT-CTGAATDesign primers

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