Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Psychrobacter sp. PRwf-1

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
12103	AGTAGACCAAAAATAGACTAAAAATAAACCAAA	Design primers
18108	TCTCTGGCTATCTGGCTATCTGGC	Design primers
24531	AGTAGGTACATTGGCATAAGTACGCACATTGGCATAAGTACGCGCATTGGCATA	Design primers
27016	ATTAATCATTTAATCAATTAATCA	Design primers
63218	TTTATGGCTTATTAA-CTATTGGCTTATTAA-CTATTGGCTTATTAA-CTATTGGCTTATTAA	Design primers
70623	TTATCTA-GTATCTA-GTATCTA-GTATCTA-GTATCTA	Design primers
74894	ACAATCCCAATAACAATTCCAATAACAAGGCCAATA	Design primers
74976	CAAACTAGCAAAATAGCAAACTAG	Design primers
87953	GACTGATAGATAGCACTGATAAATAGCACTGATAGATAG	Design primers
98960	GCAGGTTAAAGGGCAGGCTAAAGGGCAGGCTAAAAG	Design primers
100224	AGCGAGTAGCCATTAAGTGAGTATTCATTAAGCGAGTAGCCCTCG	Design primers
102562	ATACTTTTTAAATATAACCGTTTTTAAATATAACCATTTTTAAATATA	Design primers
105775	TAATTAAGCAAAGTAATTAAGCAAATTAATTAATCAAGG	Design primers
127958	TATCTAATCATAAGCCTACTAATCATAAGCTTACTAATCATAAGC	Design primers
128004	TACCAATCATGAGCC-TACCAATCATGAGCC-TACCAATCATGAGCC	Design primers
131370	CTAGGTAGCTTAGGTAGCCTAGGTCGC	Design primers
142410	TAGATAATTAAATGAATAATTAAATAAAGAATTAAA	Design primers
190835	AAAAAAACAAAACAAAACAAAAGAA	Design primers
206211	ACTTATAGATAATAACTGGTAGATAATAACTGGTAGATAATA	Design primers
257654	TGCGCTATATAAGCGCTATCTAGGTGCTATATA	Design primers
260803	CAGCCAAGGTTATTCAAAGCTCAGGTTATTCAAAGCCAAGGTTATTCA	Design primers
262465	AATGGCTAAGTAACAATGGTTAAGAAACAATGGCTAAGTAAC	Design primers
263486	TCATTTAGC-TAATTTAGC-TAATTTAGC-TAATTTAGC	Design primers
326214	CTGCTAAGCAGCTAAGCAGCTAAG	Design primers
344220	TTATTCGCTTATTTTATTCACTTACTCTATTCACTTATT	Design primers
389767	ATAAGATAAATATGATAAATACGATAA	Design primers
415216	GATTGT-GGTTGT-GGTTGT-GGTTGT	Design primers
415341	CTATGTTAAAGCAAAAAAGGTTAAAGCAAAAAAGGTTAAAGCAAA	Design primers
425304	TGACTTAAA-CGACTTAAA-CGACTTAAA	Design primers
474093	GGCTAATAAAGGCTGATATAAGCTCATAAA	Design primers
482305	AACAACTTCACGCCTAACAACTTGACACATAACAACTTGACACATAACAACTTGGCGCCA	Design primers
490145	TTTTTTGTCTGGTTTTTATCTGGTTTTTGTCTG	Design primers
546739	ATGTCAGGTGCAAAGTCAGGTGCAAAGTTAGGTGCA	Design primers
594681	ACTAAATGGCAGGCAAATAAAAGGCAGGCAAATAAAAGGCAGACA	Design primers
594878	GCCTATTTAGCGACAGCGAA-CACATTTTAGCGACAGCGAA-CACATTTTAGCGACAGCGAA-CACATTTTAGCGACAGCGAA	Design primers
595313	TTTAGTCATAGTATTTTTGATCATGGTATTTTTGATCATAGTATC	Design primers
603786	AGCTGACAACAATGCTGACAACAAGGCTGACAAAAATGCTGACAATAA	Design primers
662709	AAGCATTTAATACATGGCCATTTAATACATCACCATTTAATACAT	Design primers
721285	GAGTAATATAAGCTACGAGTAGTATAAGTAACTAGTAATATAAGTAAC	Design primers
740517	CAGCTACTAATCACTA-AAGCTACTAATCACTA-AAGCTACTAATGATTA	Design primers
781616	GATAATCATTTATA-AATAATCATTTATA-AATAATCACTTATA	Design primers
883765	AATCTCAGATAC-AATCTCAGATAC-GATCTCAGTTAC	Design primers
919895	CTTAGG-ATTAGG-ATTAGG-ATTAGG-ATTAGG	Design primers
974099	TGTTAAAGGACAGTCTGTTGAATGAGAGTCTGTTGAGTGACAGTC	Design primers
1019248	TA-AC-TA-AA-GA-TA-AA-AA-AA-GA-TA-AA-AA-AA-GA	Design primers
1064823	GTTG-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA	Design primers
1089737	AGGATA-AGGATA-AAGATA-AGGATA	Design primers
1116381	TATTTTAGCGGTTATTTTAGTGGTTATTTTAGTTGT	Design primers
1147629	TTAAGTCTAATAAAGACTAATAAAGTCTAA	Design primers
1198433	AGCTTAGATAACTTAGATAACTTAGAT	Design primers
1198461	ACTTACATA-ACTTACATA-ACTTACATA-ACTTACATA-ACTTAGATA	Design primers
1203469	AAATGAGTGTTTCTAAATGAGTGTGTTTAAATGAGTGTGTCT	Design primers
1204437	TTCATAACAGTAAATAACAGTAAATAACAG	Design primers
1244028	TAATCAAT-TAATCAAT-CAATCAAT-CAATCAAT	Design primers
1287364	TATGAGTACCAGTATCAGTATCAGTATCAGTGCCAG	Design primers
1297589	TATCTCGGCGTAAGTTTATCTAAGCATAAGTTTATCTAGGCATAAGTTTATCTAGGCATAAGTT	Design primers
1338416	GTTGGTATTTATATGGTATTTATTTGGTGTTTA	Design primers
1348736	TCAATGCGCTCTTTAATGTGCTCTTGAACGCGCTCT	Design primers
1359509	GCCATAACCAGGCATTACCAGCCATAACAA	Design primers
1402631	CTATCTTTAAAATAGCAAACTTTCAAATAGTAAGCTTTAAAATAG	Design primers
1404641	AATGGCTAATTAAATAGCTGATTAAATGGCTAGTTA	Design primers
1441550	TTATTTAAATGGTTATTGACATGGTTGTTGAAATGG	Design primers
1533976	TCAATTATTAGGAAGTTCAATTATTCGCAAATTCAATTATTAACAAGT	Design primers
1553652	TTTTATGGTGCGTATTTTAGGGTACGTATTTTAGGGTACGTA	Design primers
1652105	TCAGCATACATCAGCTTGCATCAGCATTTA	Design primers
1791643	CTATCTATG-CTTTCTATG-CTTTCTATG-CTTTCTATG-CTTTCTATG	Design primers
1817543	ATCATT-ATCATT-ATCTTT-ATTATT	Design primers
1849467	GCAGCCGCCTTTTCAGCAGCAGCTCTTTCAGCAGCGGCCCTTTCAGCAGCCGCCTTTTCAGCCGCCGCCTTTTCAGCAGCGGCCCTTTCAGCAGCGGCCCTTTCAGCAGCGGCCTTTTCAGCAGCGGCCTTTTCAGCAGCAGCTCTTTCAGCAGCGGCCCTTTCAGCGGCAGCCTTTTCAGCAGCAGCTCTTTCAGTAGCGGCCTTGTCA	Design primers
1849746	ATTTTTGGCTCA-GGTTTTGGCTCA-GGTTTTGGCTCA	Design primers
1989132	TCTGGATACTCAAAATCCGGAGACTCAACATCTTGATACTCAGAG	Design primers
2022206	GCACACTTAAACACAATTAAGCGCACTTAG	Design primers
2168834	TAGATACGAAAACAGATACGACAACAGATACGACAA	Design primers
2184801	ATTGCTATGCATTGGCATGCATTGTTATGT	Design primers
2241385	GCGCCCAAGT-CGGCCCAAGT-CGGCCCAAGT	Design primers
2244139	TATTAAATCAAGGCAACGAGTAAATCAAGGTAACGAGTAAATCAAGGCAAG	Design primers
2297619	TAAAGTACTAATGAGTTAAAGTACTAATGAGCTAAAGTAATAAGCAGT	Design primers
2306524	CTTAGCAAGTGCTTATTTAACAAGTGCCTATTTAACAAGTGCTTA	Design primers
2337573	TTTGCTTGTTAA-GTTGCTTGTTAA-GTTACTTGTTAA	Design primers
2353897	TTGTTTATAGC-GTGTTTATAGC-GTGTTTATATC	Design primers
2393145	GATAAATAG-GTTAAATAG-GTTAAATAG-GTTAAATAG	Design primers
2395472	CCACTGAAGCAGTTA-AGCCTGAAGCAGTTA-AGCCTGAAGCAGTTA-AGCCTGAAGCAGTTA	Design primers
2395542	AGTTGAACCTGGAGCAGTTGAAACTAAAGCCATTGAACCTGAAGC	Design primers
2404808	TAGCTCATAAGTAACTAATAAGTAGCCAATAAG	Design primers
2417688	CAGCTT-CTGCTT-CTGCTT-TAGCTT	Design primers
2423657	TGCTTCACCACCGGTTCCATTATCGGTGTCACCACCTGTTCCATTATCGGTGTCACCACCGGTTCCGTTATCGGTGTCACCACCGGTTCCATTACC	Design primers
2423754	GTTTCGCCACCGTTTCCATTACCG-GTTTCGCCACCGTTTCCATTACCG-GTTTCGCCACCGTTTCCATTACCG	Design primers
2425158	TCTGGTGTTTCAGTA-TCCGGGTTTTCAGTA-TCCGGGTTTTCAGTA-TCCGGGTTTTCAGTA-TCTGGAGTTTCAGTA-TCTGGAGTTTCAGTA-TCCGGGGTTTCAGTA-TCCGGGGTTTCAGTA-TCTGGGGTTTCAGTA-TCTGGTGTTTCAGTA-TCTGGTGTTTCAGTA-TCTGGTGTTTCAGTA-TCTGGTGTTTCAGTA-TCCGGGGTTTCAGTA-TCTGGGGTTTCAGTA-TCCGGGGTTTCAGTA-TCTGGGGTTTCAGTA-TCCGGGGTTTCAGTA-TCTGGGGTTTCAGTA-TCCGGGGTTTCAGTA-TCTGGGGTTTCAGTA-TCTGGGGTTTCAGTA-TCTGGGGTTTCAGTA-TCTGGGGTTTCAGTA-CCTGGGTTTTCAGTA-CCTGGGTTTTCAGTA	Design primers
2477695	GTAACTGAAGTAAGTGAAGTAATTGAA	Design primers
2542350	GCAGCAGCAACAGCAGCAGCAGCT	Design primers
2549346	CGTCTCAATTTCTGGCTCAAT-AGTTTCAACTTCAGGCTCAAT-AGTTTCAACTTCAGGCTCAAT-AGTTTCAACTTCAGGCTCAAT-AGTTTCAACTTCAGGCTCAAT	Design primers
2576070	AGTAGTTAGTAATTAGTAGTTAGTAATTAGTAGTT	Design primers
2586163	CCGCTTATCTGAAGTAACTAGCTTATATGAAGTAACTAGCTTATATGAAGTAAC	Design primers
2601799	TTAGGTAGGCATTAATAAGTTATGTAGGTGTTAATAAGTTATGTAGGCGTTAATAAG	Design primers
2611392	CCTATACGCCTATACCGCTATACG	Design primers
2642291	TATTTATAACTTAGTACGTATAACTTAGTATTTATCACTTAA	Design primers
2690593	CTATTGGCTCATCTATTGGTGCATCTATCGGCGCAT	Design primers
2691099	ATAGCTTCG-ATAGCTTCG-ATAGTTTCG-ATAGCTTCA	Design primers
2718316	AAATTGGGTGATCAGTTGGGTGATCAGTTGGGTGAT	Design primers
2722062	ATTATAGTCATGATTATAGTTATGGTTATCGTCATG	Design primers
2769026	ATGCCACAGCTGAAAATAGTACTACAGCTGAAAATAGTGCTACAGCTGAAAATA	Design primers
2831203	GTTGATAAACGTTGGTAAATACTGATAAAC	Design primers
2851679	TTTATTTACCA-GTTATTTACCA-GTTATCTACCA	Design primers
2860677	TTAATTTAAACTTAGTATCATTTAAACTCAGTATAATTTAAACTCAGT	Design primers
2879348	TATGCCAAAAACTAAATGCCAAAAAGTAAATGCCAAAAACTA	Design primers
2881145	GCTGCTGCTGCCGCTGATACTGCTGCTGCA	Design primers
2888733	TCTGAT-ACTGAT-ACTGAT-ACTGAT	Design primers
2914695	ATCACGATCATGAAGAGCACGATCATGAAGAGCACGAACACGAAG	Design primers
2914805	CATGACGAACACGAACATGACGAACACGACCATGACGAGCATGAG	Design primers
2947634	CCTTCTTTTAGCTTAGTATGCTTTTAGCTTAGTATGCTTTTAGCTTAG	Design primers
2950226	TGTCATTGATGG-CTTCATTGATGG-CTTCATTGATGG	Design primers
2954501	AGCCGCTTAACCAGCCATTTAACCAGCCATTTAACC	Design primers
2957869	GTCACTGTGTTATTAGCCGCTGTGTTATTGGTCACTTTATTATCAGCCACTGTGTTATTG	Design primers
2970117	ACGCCCAG-TCGCCCAG-TCGCCCAG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

12103

AGTAGACCAAAAATAGACTAAAAATAAACCAAA