Microsatellites /Tandem Repeats database

Genome: Burkholderia cenocepacia MC0-3 chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
163495TCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGADesign primers
175554GTGTTTCG-GTGTTTCG-GTGTTTCG-GTGTTTCGDesign primers
175587TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGA-TGTTTCGADesign primers
193840GGCTCGC-GGCTCGC-GGCTCGC-GGCTCGCDesign primers
193880GGCCCA-AGCCCA-AGCCCA-AGCCCA-AGCCCA-AGCCCA-AGCCCA-AGCCCADesign primers
193947GCCCCCG-GCTCCCG-GCTCCCG-GCTCCCG-GCTCCCG-GCTCCCGDesign primers
254287GCGGCAA-GCACCAA-GCACCAA-GCACCAA-GCACCAA-GCACCAA-GCACCAA-GCACCAA-GCACCAADesign primers
256100CTGGCCGGCAA-CCGCCCGGCAA-CCGCCCGGCAA-CCGCCCGGCAA-CCGCCCGGCAA-CCGCCCGGCAADesign primers
256167CGCCCGGCAACCACCCGGCAACCACCCGGCAACDesign primers
571223AACGCACGC-AACGCACGC-AACGCACGCDesign primers
571405CACCGATC-CACCGATC-CACCGATCDesign primers
697291ACCGGGCGTCCCTGACCGGGCGTCCCTAACCGGGCGTCCCCGDesign primers
879886GCGCCA-ACGCCA-ACGCCA-ACGCCA-ACGCCA-ACGCCA-ACGCCA-ACGCCADesign primers
968949ATGATC-GTGATC-GTGATC-GTGATC-GTGATC-GTGATC-GTGATC-GTGATCDesign primers
1152323CCGCCGCCC-CCGCCGCCC-CCGCCGCCCDesign primers
1181203GCTGACG-GCTGACG-GCTGACG-GCTGACGDesign primers
1246283GGACGGCG-GGACGGCG-GGACGGCG-GGACGGCGDesign primers
1246316GACAACGG-GACAACGG-GACAACGG-GACAACGG-GACAACGGDesign primers
2852210TCGGGTGGCGGTACT-TCGGGTGGTGGTACT-TCGGGTGGTGGTACT-TCGGGTGGTGGTACTDesign primers
2852321GGCGGCACCTCGGGTGGCGGCACTTCGGGTGGCGGCACTTCGGGTDesign primers
2852367GCGGTACTTCGGGTG-GCGGTACTTCCGGTG-GCGGTACTTCCGGTG-GCGGTACTTCCGGTG-GCGGTACTTCCGGTG-GCGGTACTTCGGGTGDesign primers
2852748ACGGTG-GCGGTG-GCGGTG-GCGGTG-GCGGTG-GCGGTGDesign primers
2852815TGGCGGCGG-TGGCGGCGG-TGGCGGCGGDesign primers
2852869CGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGGDesign primers
3328467CCGCCTT-CCGCCTT-CCGCCTT-CCGCCTT-CCGCCTTDesign primers
3328503CGCTTTCCGCCTTCCGCTTTCCGCTTTCCGCTTTCCGCTTTCCGCTTTCCGCCTTCDesign primers
3366488TGGTG-CGGTG-CGGTG-CGGTG-CGGTG-CGGTGDesign primers
3366550GCTTGCC-GCTTGCC-GCTTGCC-GCTTGCCDesign primers
3388574CGCCTGCTACT-TGCCTGCTACT-TGCCTGCTACTDesign primers

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