Microsatellites /Tandem Repeats database

Genome: Chloroflexus sp. Y-400-fl

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
71739CACAGAGG-CACAGAGG-CACAGAGGDesign primers
157039GAGCGTGGC-GAGCGTGGC-GAGCGTGGCDesign primers
217445GAGATAG-GAGATAG-GAGATAG-GAGATAGDesign primers
217533TAGAAGG-TAGAAGG-TAGAAGG-TAGAAGGDesign primers
227018TAGGAGATAGGAGG-TAGGAGATAGGAGG-TAGGAGATAGGAGGDesign primers
227061AGGAGGTAGGAGAT-AGGAGGTAGGAGAT-AGGAGGTAGGAGATDesign primers
227179TAGGAGA-TAGGAGA-TAGGAGA-TAGGAGADesign primers
255741ACCGGGCTGGTCGTTACCGTCGGC-ACCGGGCTGGTCGTTACCGTCGGC-ACCGGGCTGGTCGTTACCGTCGGCDesign primers
368583ATCACCCTC-ATCACCCTC-ATCACCCTCDesign primers
368983GGTTCCGGTGCG-GGTTCCGGTGCG-GGTTCCGGTGCG-GGTTCCGGTGCG-GGTTCCGGTGCG-GGTTCCGGTGCG-GGTTCCGGTGCG-GGTTCCGGTGCGDesign primers
412271TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATCDesign primers
744563AGGAAAT-AGGAAAT-AGGAAAT-AGGAAATDesign primers
969961CCCACTC-CCCACTC-CCCACTC-CCCACTC-CCCACTCDesign primers
999709AAAGTAGGAGATAGG-AAAGTAGGAGATAGG-AAAGTAGGAGATAGG-AAAGTAGGAGATAGGDesign primers
1005323GATAGGA-GATAGGA-GATAGGA-GATAGGA-GATAGGA-GATAGGA-GATAGGADesign primers
1017170CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTAT-CTCCTATCTTCTCTCTCCTATDesign primers
1095869GGGCGGGTTTAGCACCCA-GGGCGGGTTTAGCACCCA-GGGCGGGTTTAGCACCCA-GGGCGGGTTTAGCACCCADesign primers
1164419TCCTCTC-TCCTCTC-TCCTCTC-TCCTCTC-TCCTCTC-TCCTCTCDesign primers
1391876CCTCCGCCAGGACTGGAAGCACGCG-CCTCCGCCAGGACTGGAAGCACGCG-CCTCCGCCAGGACTGGAAGCACGCG-CCTCCGCCAGGACTGGAAGCACGCGDesign primers
1479826CTATCTC-CTATCTC-CTATCTC-CTATCTCDesign primers
1921942TAGAAGATAGGAGA-TAGAAGATAGGAGA-TAGAAGATAGGAGADesign primers
1922012ATAGAAGATAGGAG-ATAGAAGATAGGAG-ATAGAAGATAGGAGDesign primers
2179617ACCCGCCCCGCCAGC-ACCCGCCCCGCCAGC-ACCCGCCCCGCCAGC-ACCCGCCCCGCCAGCDesign primers
2192248AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGADesign primers
2218636GTAGGGGCGGGTTTG-GTAGGGGCGGGTTTG-GTAGGGGCGGGTTTGDesign primers
2269291TTGAGAACCCAGGGCGGG-TTGAGAACCCAGGGCGGG-TTGAGAACCCAGGGCGGGDesign primers
2446613AGATAGA-AGATAGA-AGATAGA-AGATAGA-AGATAGA-AGATAGA-AGATAGA-AGATAGA-AGATAGA-AGATAGA-AGATAGADesign primers
2551833TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAA-TAGGAGATAGGAAADesign primers
2552350CTAACTTCTAACTC-CTAACTTCTAACTC-CTAACTTCTAACTC-CTAACTTCTAACTC-CTAACTTCTAACTCDesign primers
2552421TAACTCCTAACTTC-TAACTCCTAACTTC-TAACTCCTAACTTC-TAACTCCTAACTTCDesign primers
2552515CTCCTAACTTCTAA-CTCCTAACTTCTAA-CTCCTAACTTCTAA-CTCCTAACTTCTAA-CTCCTAACTTCTAADesign primers
2938560GGTTCCGTAGGGGCG-GGTTCCGTAGGGGCG-GGTTCCGTAGGGGCGDesign primers
2938620GGTTCCGTAGGGGCG-GGTTCCGTAGGGGCG-GGTTCCGTAGGGGCGDesign primers
3070036TCGGGGCGGGTTGGGCACCGG-TCGGGGCGGGTTGGGCACCGG-TCGGGGCGGGTTGGGCACCGGDesign primers
3070100CGGGGCGGGTTGGGTACCGGT-CGGGGCGGGTTGGGTACCGGT-CGGGGCGGGTTGGGTACCGGT-CGGGGCGGGTTGGGTACCGGT-CGGGGCGGGTTGGGTACCGGTDesign primers
3082613AGATAGG-AGATAGG-AGATAGG-AGATAGGDesign primers
3082649GATAGGAGATAGGG-GATAGGAGATAGGG-GATAGGAGATAGGGDesign primers
3500607CTCCTACTTCCTAT-CTCCTACTTCCTAT-CTCCTACTTCCTAT-CTCCTACTTCCTAT-CTCCTACTTCCTATDesign primers
3812676CTATCTT-CTATCTT-CTATCTT-CTATCTTDesign primers
3812705TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTC-TATCTCCTATCTTCDesign primers
3904362CTCTCTTCTCGTTC-CTCTCTTCTCGTTC-CTCTCTTCTCGTTC-CTCTCTTCTCGTTCDesign primers
3904419TATTTTCTCGCTCC-TATTTTCTCGCTCC-TATTTTCTCGCTCC-TATTTTCTCGCTCCDesign primers
4189944GGTGGCGGT-GGTGGCGGT-GGTGGCGGTDesign primers
4191480TCGTCATCG-TCGTCATCG-TCGTCATCG-TCGTCATCG-TCGTCATCG-TCGTCATCG-TCGTCATCGDesign primers
4241000CAGCCGACCACCGCTCCTGCCGAG-CAGCCGACCACCGCTCCTGCCGAG-CAGCCGACCACCGCTCCTGCCGAGDesign primers
4366053TCCTCTC-TCCTCTC-TCCTCTC-TCCTCTC-TCCTCTC-TCCTCTC-TCCTCTCDesign primers
4381180CTATCTC-CTATCTC-CTATCTC-CTATCTC-CTATCTC-CTATCTC-CTATCTC-CTATCTCDesign primers
4418667CGGGTTCTGGAGGGG-CGGGTTCTGGAGGGG-CGGGTTCTGGAGGGG-CGGGTTCTGGAGGGG-CGGGTTCTGGAGGGGDesign primers
4438582CCCCACT-CCCCACT-CCCCACT-CCCCACT-CCCCACT-CCCCACTDesign primers
4551612AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGA-AGATAGGAGATAGADesign primers
4558381CCTCCTA-CCTCCTA-CCTCCTA-CCTCCTA-CCTCCTA-CCTCCTADesign primers
4558427CTATCTT-CTATCTT-CTATCTT-CTATCTTDesign primers
4606786CTATCTC-CTATCTC-CTATCTC-CTATCTC-CTATCTCDesign primers
4606836CTATCTCCTATCTT-CTATCTCCTATCTT-CTATCTCCTATCTT-CTATCTCCTATCTT-CTATCTCCTATCTTDesign primers
4612602ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAG-ATAGGAGDesign primers
4623903CTCCTATTTCCTCA-CTCCTATTTCCTCA-CTCCTATTTCCTCA-CTCCTATTTCCTCA-CTCCTATTTCCTCA-CTCCTATTTCCTCA-CTCCTATTTCCTCA-CTCCTATTTCCTCA-CTCCTATTTCCTCADesign primers
4642837AGAAAATAGGACAG-AGAAAATAGGACAG-AGAAAATAGGACAG-AGAAAATAGGACAG-AGAAAATAGGACAG-AGAAAATAGGACAG-AGAAAATAGGACAGDesign primers
4761128GATAGGA-GATAGGA-GATAGGA-GATAGGADesign primers
4761161GAAGATA-GAAGATA-GAAGATA-GAAGATA-GAAGATADesign primers
4764128TAGGAAATAGGTAGG-TAGGAAATAGGTAGG-TAGGAAATAGGTAGG-TAGGAAATAGGTAGG-TAGGAAATAGGTAGG-TAGGAAATAGGTAGG-TAGGAAATAGGTAGG-TAGGAAATAGGTAGGDesign primers
4789509TAGGAGATAGAAGA-TAGGAGATAGAAGA-TAGGAGATAGAAGA-TAGGAGATAGAAGADesign primers
4999597TTTCTATAGGGGCGGG-TTTCTATAGGGGCGGG-TTTCTATAGGGGCGGG-TTTCTATAGGGGCGGG-TTTCTATAGGGGCGGG-TTTCTATAGGGGCGGGDesign primers
5037647CGACCAACACGC-CGACCAACACGC-CGACCAACACGCDesign primers
5038049CGACCAACACGC-CGACCAACACGC-CGACCAACACGCDesign primers
5038129ACCAACACGCCCACGGCT-ACCAACACGCCCACGGCT-ACCAACACGCCCACGGCTDesign primers
5038612TTCCTAC-TTCCTAC-TTCCTAC-TTCCTAC-TTCCTAC-TTCCTAC-TTCCTACDesign primers
5038662TCCTATC-TCCTATC-TCCTATC-TCCTATC-TCCTATCDesign primers

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