Microsatellites /Tandem Repeats database

Genome: Chloroflexus sp. Y-400-fl

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
71739CACAGAGG-CACAGAGG-CACAGAGGDesign primers
157039GAGCGTGGC-GAGCGTGGC-GAGCGTGGCDesign primers
217445GAGATAG-GAGATAG-GAGATAG-GAGATAGDesign primers
217482GATAGGG-GATAGGG-GATAGGA-GATAGGG-GATAGGG-GATAGGGDesign primers
217533TAGAAGG-TAGAAGG-TAGAAGG-TAGAAGGDesign primers
227014GAGATAG-GAGATAG-GAGGTAG-GAGATAG-GAGGTAG-GAGATAGDesign primers
227057AGGTAGG-AGGTAGG-AGATAGG-AGGTAGG-AGATAGG-AGGTAGGDesign primers
227100GATAGGAGATAGGAGGTAGGAGGTAGGAGATAGGA-GATAGGAGATAGGAGGTAGGAGGTAGGAGATAGGA-GATAGGAGGTAGGAGATAGGAGATAGGAGATAGGADesign primers
255588TCCGTCGGCACCGGGCTGGTCGTTACCGTCGGTACCGGGCTGGTCGTT-ACCGTCGGCACCGGGCTGGTCGTTACCGTCGGTACCGGGCTGGTCGTT-ACCGTCGGCACCGGGCTGGTCGTTACCGTCGGTACCGGGCTGGTCGTT-ACCGTCGGTACCGGGCTGGTCGTTACCGTCGGCACCGGGCTGGTCGTT-ACCGTCGGCACCGGGCTGGTCGTTACCGTCGGCACCGGGCTGGTCGTT-ACCGTCGGTACCGGGCTGGTCGTTACCGTCGGCACCGGGCTGGTCGTTDesign primers
257274GCCGTTGGCTCTGGGGTCACGCTCGCCGTTGGCTCTGGCGTCGCGCTCGCCGTTGGCTCTGGCGTCACGCTTGCCGTTGGCTCTGGCGTCGCGCTCGCCGTTGGCTCTGGCGTCACGCTTGCCGTTGGCTCTGGCGTCGCGCTCGCCGTTGGCTCTGGTGTCACGCTTGCCGTTGGCTCTGGTGTCACGCTTGCCGTTGGCTCTGGCGTCGCGCTCDesign primers
368583ATCACCCTC-ATCACCCTC-ATCACCCTCDesign primers
368977GGTTCCGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCCDesign primers
391189AAATAGGAGATAGGCATTAGGGGATAGGAGATAGGCATTAGGTATTAGGAGATAGGCATTAGGDesign primers
412270TTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT-CTTCTATDesign primers
724191GCGCAATCTAAGC-GCGCAATCTAAGC-GCGCAATCCAAGCDesign primers
744563AGGAAAT-AGGAAAT-AGGAAAT-AGGAAATDesign primers
874222AGAACCCGCCCCTAC-CGAACCCGCCCCTAC-CGAACCCGCCCCTACDesign primers
969961CCCACTC-CCCACTC-CCCACTC-CCCACTC-CCCACTCDesign primers
999706AGAAAAGTAGGAGAT-AGGAAAGTAGGAGAT-AGGAAAGTAGGAGAT-AGGAAAGTAGGAGAT-AGGAAAGTAGGAGATDesign primers
1005319AGGGGAT-AGGAGAT-AGGAGAT-AGGAGAT-AGGAGAT-AGGAGATDesign primers
1017165CCTCGCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCTDesign primers
1059239CGCACCGGCGGCTCACGCACTGGCGGCTCACGCACCGGCGGCTCTDesign primers
1059482CGCACCGGCGGCTCACGCACTGGCGGCTCACGCACCGGCGGTTCADesign primers
1095868GGGGCGGGTTTAGCACCC-AGGGCGGGTTTAGCACCC-AGGGCGGGTTTAGCACCC-AGGGCGGGTTTAGCACCCDesign primers
1095941CGGCGGGTTTAGCACCCAGGGCGGGTTTAGCACCCACGGCGGGTTTAGCACCCGDesign primers
1164417TTTCCTC-TCTCCTC-TCTCCTC-TCTCCTC-TCTCCTC-TCTCCTCDesign primers
1367447CCCTCTCTCCTATTTCCTATC-TCCTCCCTCCTATTTCCTATC-TCCTCCCTCCTATTTCCTATC-TCCTCTCTCCTATTTCCTATC-TCCTCTCTCCTATTTCCTATCDesign primers
1391872CGATCCTCCGCCAGGACTGGAAGCA-CGCGCCTCCGCCAGGACTGGAAGCA-CGCGCCTCCGCCAGGACTGGAAGCA-CGCGCCTCCGCCAGGACTGGAAGCADesign primers
1479826CTATCTC-CTATCTC-CTATCTC-CTATCTCDesign primers
1921939AGGTAGAAGATAGGAGATAGAAGATAGGAGATAGAAGATAGGDesign primers
1922011AATAGAAGATAGGA-GATAGAAGATAGGA-GATAGAAGATAGGADesign primers
2146011ATGTGGGATA-ATGTGGGATA-GTGTGGGATA-ATGTGTGATADesign primers
2179616AACCCGCCCCGCCAG-CACCCGCCCCGCCAG-CACCCGCCCCGCCAG-CACCCGCCCCGCCAGDesign primers
2192234AGATAGT-AGATAGG-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGGDesign primers
2218605TGTAGGGGCGGGTTT-GGTAGGGGCGGGTTT-AGTAGGGGCGGGTTT-GGTAGGGGCGGGTTT-GGTAGGGGCGGGTTTDesign primers
2269288GGCTTGAGAACCCAGGGCGGGTTGAGAACCCAGGGCGGGTTGAGAACCCAGGGCDesign primers
2279366TTTCCTATCTCCTACTTCCTATCTCCTATTTCCTATCTCCTADesign primers
2320640TGGTGCCGGGGT-CGGTGCCGGGGT-CGGTGCCGGGGTDesign primers
2446603AGGAGATAGGAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATDesign primers
2551828GGAAGTAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATADesign primers
2552327TTCTAACTTCTAACTCCTAAC-TTCTAACTTCTAACTCCTAAC-TTCTAACTCCTAACTTCTAAC-TCCTAACTTCTAACTCCTAAC-TTCTAACTCCTAACTCCTAAC-TTCTAACTCCTAACTTCTAAC-TCCTAACTTCTAACTCCTAAC-TTCTAACDesign primers
2552483CTAACTCCTAACTT-CTATCTCCTAACTT-CTATCTCCTAACTT-CTAACTCCTAACTT-CTAACTCCTAACTT-CTAACTCCTAACTT-CTAACTCCTAACTT-CTAACTCCTAACTTDesign primers
2627951CACCCTATTTCCTCCCTCCTCCACCCTATTTCCTCTCTTCTCCACCCTATTTCCTCCTTCCTCCACCCTATTTTCTCCTTCCTCDesign primers
2938544GGGTTCCGTAGGGGC-AGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-TGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGAC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGGCDesign primers
3024033CTCCTATCTTCTATCTTCTATCTTCTATCTCCTATTTTCTATDesign primers
3070034TATCGGGGCGGGTTGGGCACC-GGTCGGGGCGGGTTGGGCACC-GGTCGGGGCGGGTTGGGCACCDesign primers
3070098GTCGGGGCGGGTTGGGTACCG-GTCGGGGCGGGTTGGGTACCG-GTCGGGGCGGGTTGGGTACCG-GTCGGGGCGGGTTGGGTACCG-GTCGGGGCGGGTTGGGTACCGDesign primers
3082596AGGAGATAGGAGATAGAAGATAGGAGATAGGAGATAGGAGATAGGGGATAGGAGATAGGAGATAGGGGATAGGAGATAGGGGATAGGAGATAGGGGATDesign primers
3282752TTCTCCTATTTGCTCTCTTCT-ATCTCCTATTTGCTCTCTTCT-ACCTCCTATTTGCTCTCTTCTDesign primers
3292042CTCCTACCTCCTATCTCCTATCTCCTATCTTCTACCTCCTATDesign primers
3500602CCTACCTCCTACTT-CCTATCTCCTACTT-CCTATCTCCTACTT-CCTATCTCCTACTT-CCTATCTCCTACTTDesign primers
3608989AGGTAGGAGGTAGGGGGGAGAAGATAGGAGATAGGGGGGAGAAGGTAGGAGATAGGGGGGAGADesign primers
3812675CCTATCTTCTATCT-TCTATCTTCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCTDesign primers
3904361ACTCTCTTCTCGTT-CCTCTCTTCTCGTT-CCTCTCTTCTCGTT-CCTCTCTTCTCGTTDesign primers
3904418CTATTTTCTCGCTC-CTATTTTCTCGCTC-CTATTTTCTCGCTC-CTATTTTCTCGCTC-CTATTTTCTCGTTC-CTATTTTCTCGCTCDesign primers
4062145TCTCGCTCCTCCCTCTCTCGCTCCTACCTCTCTCGCTCCTCCCTCDesign primers
4104091AAACCCGCCCCTACCAAACCCGCCTCTACCAAACCCGCCCCTACTAAACCCGCCCCTACGDesign primers
4189944GGTGGCGGT-GGTGGCGGT-GGTGGCGGTDesign primers
4189981CAGTCGGTGATG-CAGTCGCTGATG-CAGTCGGTGATG-CAGTCGGTGATG-CAGTTGGTGATG-CAGTTGGTGATG-CAGTCGGTGATGDesign primers
4191479ATCGTCATC-GTCGTCATC-GTCGTCATC-GTCGTCATC-GTCGTCATC-GTCGTCATCDesign primers
4240998CTCAGCCGACCACCGCTCCTGCCG-AGCAGCCGACCACCGCTCCTGCCG-AGCAGCCGACCACCGCTCCTGCCGDesign primers
4366052TTCCTCT-CTCCTCT-CTCCTCT-CTCCTCT-CTCCTCT-CTCCTCTDesign primers
4366122CTTCTATCTCCTATCTTCTATCTTCTATCTTCTATCTCCTATDesign primers
4381152CTATCTCCTATCTT-CTATCTTCTATCTT-CTATCTCCTATCTC-CTATCTCCTATCTC-CTATCTCCTATCTC-CTATCTCCTATCTCDesign primers
4418665GACGGGTTCTGGAGG-GGCGGGTTCTGGAGG-GGCGGGTTCTGGAGG-GGCGGGTTCTGGAGG-GGCGGGTTCTGGAGGDesign primers
4438580CCCCCCA-CTCCCCA-CTCCCCA-CTCCCCA-CTCCCCA-CTCCCCADesign primers
4551609AGGAGAT-AGGAGAT-AGAAGAT-AGGAGAT-AGAAGAT-AGGAGAT-AGAAGAT-AGGAGAT-AGAAGAT-AGGAGATDesign primers
4558380TCCTCCT-ACCTCCT-ACCTCCT-ACCTCCT-ACCTCCT-ACCTCCTDesign primers
4558427CTATCTT-CTATCTT-CTATCTT-CTATCTTDesign primers
4606786CTATCTC-CTATCTC-CTATCTC-CTATCTC-CTATCTCDesign primers
4606824ATCTTCTATCTCCTATCTCCTATCTTCTATCTCCTATCTTCTATCTCCTATCTTCTATCTCCTATCTTCTATCTCCTATCTTCTATCTCCTATCTCCTACCTCCTDesign primers
4612590AGGAAATAGGAAATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATDesign primers
4623902TCTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTCDesign primers
4642836AAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACADesign primers
4731108GCCGGAGCCGGAGCGGCTGCCGGAGCCGGAGCGACTGCTGGAGCCGGAGCGGCTDesign primers
4761128GATAGGA-GATAGGA-GATAGGA-GATAGGADesign primers
4761161GAAGATA-GAAGATA-GAAGATA-GAAGATA-GAAGATADesign primers
4764127ATAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAGDesign primers
4789507GTTAGGAGATAGAA-GATAGGAGATAGAA-GATAGGAGATAGAA-GATAGGAGATAGAADesign primers
4999587TAGGGGCGGATTTCTA-TAGGGGCGGGTTTCTA-TAGGGGCGGGTTTCTA-TAGGGGCGGGTTTCTA-TAGGGGCGGGTTTCTA-TAGGGGCGGGTTTCTADesign primers
5037263CACGGCGACCAACACGCCGACCAACACGCCGACCAADesign primers
5037642CACGGCGACCAACACGCCGACCAACACGCCGACCAADesign primers
5037689CCACCAACACGCCAACCAACACGCCGACCAACACGCCGACCAACACGCDesign primers
5038044CACGGCGACCAACACGCCGACCAACACGCCGACCAADesign primers
5038091CCACCAACACGCCAACCAACACGCCGACCAACACGCCGACCAACACGCDesign primers
5038140CACGGCTACCAACACGCC-CACGGCTACCAACACGCC-CACGGCTACCAACACGCCDesign primers
5038608CTATTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTCDesign primers
5038665TATCTCC-TATCTCC-TATCTCC-TATCTCC-TATCTCCDesign primers
5044641ACGCCAACCGGCACGCGCACCGCTACGCCAACCGGCACGCGCACCACCACACCGACCGGCACGCGCACCGCTACGCCAACCGGCACGCGCACCACCACACCGACCGGCACGCGCACCGCTACGCCAACCGGCACGCGCACTGCTDesign primers
5249363GATAGGAGATAGAA-GATAGGAGATAGAA-GATAGGAGATAGGADesign primers

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