This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 71739 | CACAGAGG-CACAGAGG-CACAGAGG | Design primers |
| 157039 | GAGCGTGGC-GAGCGTGGC-GAGCGTGGC | Design primers |
| 217445 | GAGATAG-GAGATAG-GAGATAG-GAGATAG | Design primers |
| 217482 | GATAGGG-GATAGGG-GATAGGA-GATAGGG-GATAGGG-GATAGGG | Design primers |
| 217533 | TAGAAGG-TAGAAGG-TAGAAGG-TAGAAGG | Design primers |
| 227014 | GAGATAG-GAGATAG-GAGGTAG-GAGATAG-GAGGTAG-GAGATAG | Design primers |
| 227057 | AGGTAGG-AGGTAGG-AGATAGG-AGGTAGG-AGATAGG-AGGTAGG | Design primers |
| 227100 | GATAGGAGATAGGAGGTAGGAGGTAGGAGATAGGA-GATAGGAGATAGGAGGTAGGAGGTAGGAGATAGGA-GATAGGAGGTAGGAGATAGGAGATAGGAGATAGGA | Design primers |
| 255588 | TCCGTCGGCACCGGGCTGGTCGTTACCGTCGGTACCGGGCTGGTCGTT-ACCGTCGGCACCGGGCTGGTCGTTACCGTCGGTACCGGGCTGGTCGTT-ACCGTCGGCACCGGGCTGGTCGTTACCGTCGGTACCGGGCTGGTCGTT-ACCGTCGGTACCGGGCTGGTCGTTACCGTCGGCACCGGGCTGGTCGTT-ACCGTCGGCACCGGGCTGGTCGTTACCGTCGGCACCGGGCTGGTCGTT-ACCGTCGGTACCGGGCTGGTCGTTACCGTCGGCACCGGGCTGGTCGTT | Design primers |
| 257274 | GCCGTTGGCTCTGGGGTCACGCTCGCCGTTGGCTCTGGCGTCGCGCTCGCCGTTGGCTCTGGCGTCACGCTTGCCGTTGGCTCTGGCGTCGCGCTCGCCGTTGGCTCTGGCGTCACGCTTGCCGTTGGCTCTGGCGTCGCGCTCGCCGTTGGCTCTGGTGTCACGCTTGCCGTTGGCTCTGGTGTCACGCTTGCCGTTGGCTCTGGCGTCGCGCTC | Design primers |
| 368583 | ATCACCCTC-ATCACCCTC-ATCACCCTC | Design primers |
| 368977 | GGTTCCGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC-GGTGCGGGTTCC | Design primers |
| 391189 | AAATAGGAGATAGGCATTAGGGGATAGGAGATAGGCATTAGGTATTAGGAGATAGGCATTAGG | Design primers |
| 412270 | TTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT-CTTCTAT | Design primers |
| 724191 | GCGCAATCTAAGC-GCGCAATCTAAGC-GCGCAATCCAAGC | Design primers |
| 744563 | AGGAAAT-AGGAAAT-AGGAAAT-AGGAAAT | Design primers |
| 874222 | AGAACCCGCCCCTAC-CGAACCCGCCCCTAC-CGAACCCGCCCCTAC | Design primers |
| 969961 | CCCACTC-CCCACTC-CCCACTC-CCCACTC-CCCACTC | Design primers |
| 999706 | AGAAAAGTAGGAGAT-AGGAAAGTAGGAGAT-AGGAAAGTAGGAGAT-AGGAAAGTAGGAGAT-AGGAAAGTAGGAGAT | Design primers |
| 1005319 | AGGGGAT-AGGAGAT-AGGAGAT-AGGAGAT-AGGAGAT-AGGAGAT | Design primers |
| 1017165 | CCTCGCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT-CCTATCTCCTATCTTCTCTCT | Design primers |
| 1059239 | CGCACCGGCGGCTCACGCACTGGCGGCTCACGCACCGGCGGCTCT | Design primers |
| 1059482 | CGCACCGGCGGCTCACGCACTGGCGGCTCACGCACCGGCGGTTCA | Design primers |
| 1095868 | GGGGCGGGTTTAGCACCC-AGGGCGGGTTTAGCACCC-AGGGCGGGTTTAGCACCC-AGGGCGGGTTTAGCACCC | Design primers |
| 1095941 | CGGCGGGTTTAGCACCCAGGGCGGGTTTAGCACCCACGGCGGGTTTAGCACCCG | Design primers |
| 1164417 | TTTCCTC-TCTCCTC-TCTCCTC-TCTCCTC-TCTCCTC-TCTCCTC | Design primers |
| 1367447 | CCCTCTCTCCTATTTCCTATC-TCCTCCCTCCTATTTCCTATC-TCCTCCCTCCTATTTCCTATC-TCCTCTCTCCTATTTCCTATC-TCCTCTCTCCTATTTCCTATC | Design primers |
| 1391872 | CGATCCTCCGCCAGGACTGGAAGCA-CGCGCCTCCGCCAGGACTGGAAGCA-CGCGCCTCCGCCAGGACTGGAAGCA-CGCGCCTCCGCCAGGACTGGAAGCA | Design primers |
| 1479826 | CTATCTC-CTATCTC-CTATCTC-CTATCTC | Design primers |
| 1921939 | AGGTAGAAGATAGGAGATAGAAGATAGGAGATAGAAGATAGG | Design primers |
| 1922011 | AATAGAAGATAGGA-GATAGAAGATAGGA-GATAGAAGATAGGA | Design primers |
| 2146011 | ATGTGGGATA-ATGTGGGATA-GTGTGGGATA-ATGTGTGATA | Design primers |
| 2179616 | AACCCGCCCCGCCAG-CACCCGCCCCGCCAG-CACCCGCCCCGCCAG-CACCCGCCCCGCCAG | Design primers |
| 2192234 | AGATAGT-AGATAGG-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG-AGATAGA-AGATAGG | Design primers |
| 2218605 | TGTAGGGGCGGGTTT-GGTAGGGGCGGGTTT-AGTAGGGGCGGGTTT-GGTAGGGGCGGGTTT-GGTAGGGGCGGGTTT | Design primers |
| 2269288 | GGCTTGAGAACCCAGGGCGGGTTGAGAACCCAGGGCGGGTTGAGAACCCAGGGC | Design primers |
| 2279366 | TTTCCTATCTCCTACTTCCTATCTCCTATTTCCTATCTCCTA | Design primers |
| 2320640 | TGGTGCCGGGGT-CGGTGCCGGGGT-CGGTGCCGGGGT | Design primers |
| 2446603 | AGGAGATAGGAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGATAGAAGAT | Design primers |
| 2551828 | GGAAGTAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA-GGAAATAGGAGATA | Design primers |
| 2552327 | TTCTAACTTCTAACTCCTAAC-TTCTAACTTCTAACTCCTAAC-TTCTAACTCCTAACTTCTAAC-TCCTAACTTCTAACTCCTAAC-TTCTAACTCCTAACTCCTAAC-TTCTAACTCCTAACTTCTAAC-TCCTAACTTCTAACTCCTAAC-TTCTAAC | Design primers |
| 2552483 | CTAACTCCTAACTT-CTATCTCCTAACTT-CTATCTCCTAACTT-CTAACTCCTAACTT-CTAACTCCTAACTT-CTAACTCCTAACTT-CTAACTCCTAACTT-CTAACTCCTAACTT | Design primers |
| 2627951 | CACCCTATTTCCTCCCTCCTCCACCCTATTTCCTCTCTTCTCCACCCTATTTCCTCCTTCCTCCACCCTATTTTCTCCTTCCTC | Design primers |
| 2938544 | GGGTTCCGTAGGGGC-AGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-TGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGAC-GGGTTCCGTAGGGGC-GGGTTCCGTAGGGGC | Design primers |
| 3024033 | CTCCTATCTTCTATCTTCTATCTTCTATCTCCTATTTTCTAT | Design primers |
| 3070034 | TATCGGGGCGGGTTGGGCACC-GGTCGGGGCGGGTTGGGCACC-GGTCGGGGCGGGTTGGGCACC | Design primers |
| 3070098 | GTCGGGGCGGGTTGGGTACCG-GTCGGGGCGGGTTGGGTACCG-GTCGGGGCGGGTTGGGTACCG-GTCGGGGCGGGTTGGGTACCG-GTCGGGGCGGGTTGGGTACCG | Design primers |
| 3082596 | AGGAGATAGGAGATAGAAGATAGGAGATAGGAGATAGGAGATAGGGGATAGGAGATAGGAGATAGGGGATAGGAGATAGGGGATAGGAGATAGGGGAT | Design primers |
| 3282752 | TTCTCCTATTTGCTCTCTTCT-ATCTCCTATTTGCTCTCTTCT-ACCTCCTATTTGCTCTCTTCT | Design primers |
| 3292042 | CTCCTACCTCCTATCTCCTATCTCCTATCTTCTACCTCCTAT | Design primers |
| 3500602 | CCTACCTCCTACTT-CCTATCTCCTACTT-CCTATCTCCTACTT-CCTATCTCCTACTT-CCTATCTCCTACTT | Design primers |
| 3608989 | AGGTAGGAGGTAGGGGGGAGAAGATAGGAGATAGGGGGGAGAAGGTAGGAGATAGGGGGGAGA | Design primers |
| 3812675 | CCTATCTTCTATCT-TCTATCTTCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT-TCTATCTCCTATCT | Design primers |
| 3904361 | ACTCTCTTCTCGTT-CCTCTCTTCTCGTT-CCTCTCTTCTCGTT-CCTCTCTTCTCGTT | Design primers |
| 3904418 | CTATTTTCTCGCTC-CTATTTTCTCGCTC-CTATTTTCTCGCTC-CTATTTTCTCGCTC-CTATTTTCTCGTTC-CTATTTTCTCGCTC | Design primers |
| 4062145 | TCTCGCTCCTCCCTCTCTCGCTCCTACCTCTCTCGCTCCTCCCTC | Design primers |
| 4104091 | AAACCCGCCCCTACCAAACCCGCCTCTACCAAACCCGCCCCTACTAAACCCGCCCCTACG | Design primers |
| 4189944 | GGTGGCGGT-GGTGGCGGT-GGTGGCGGT | Design primers |
| 4189981 | CAGTCGGTGATG-CAGTCGCTGATG-CAGTCGGTGATG-CAGTCGGTGATG-CAGTTGGTGATG-CAGTTGGTGATG-CAGTCGGTGATG | Design primers |
| 4191479 | ATCGTCATC-GTCGTCATC-GTCGTCATC-GTCGTCATC-GTCGTCATC-GTCGTCATC | Design primers |
| 4240998 | CTCAGCCGACCACCGCTCCTGCCG-AGCAGCCGACCACCGCTCCTGCCG-AGCAGCCGACCACCGCTCCTGCCG | Design primers |
| 4366052 | TTCCTCT-CTCCTCT-CTCCTCT-CTCCTCT-CTCCTCT-CTCCTCT | Design primers |
| 4366122 | CTTCTATCTCCTATCTTCTATCTTCTATCTTCTATCTCCTAT | Design primers |
| 4381152 | CTATCTCCTATCTT-CTATCTTCTATCTT-CTATCTCCTATCTC-CTATCTCCTATCTC-CTATCTCCTATCTC-CTATCTCCTATCTC | Design primers |
| 4418665 | GACGGGTTCTGGAGG-GGCGGGTTCTGGAGG-GGCGGGTTCTGGAGG-GGCGGGTTCTGGAGG-GGCGGGTTCTGGAGG | Design primers |
| 4438580 | CCCCCCA-CTCCCCA-CTCCCCA-CTCCCCA-CTCCCCA-CTCCCCA | Design primers |
| 4551609 | AGGAGAT-AGGAGAT-AGAAGAT-AGGAGAT-AGAAGAT-AGGAGAT-AGAAGAT-AGGAGAT-AGAAGAT-AGGAGAT | Design primers |
| 4558380 | TCCTCCT-ACCTCCT-ACCTCCT-ACCTCCT-ACCTCCT-ACCTCCT | Design primers |
| 4558427 | CTATCTT-CTATCTT-CTATCTT-CTATCTT | Design primers |
| 4606786 | CTATCTC-CTATCTC-CTATCTC-CTATCTC-CTATCTC | Design primers |
| 4606824 | ATCTTCTATCTCCTATCTCCTATCTTCTATCTCCTATCTTCTATCTCCTATCTTCTATCTCCTATCTTCTATCTCCTATCTTCTATCTCCTATCTCCTACCTCCT | Design primers |
| 4612590 | AGGAAATAGGAAATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGATAGGAGAT | Design primers |
| 4623902 | TCTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC-ACTCCTATTTCCTC | Design primers |
| 4642836 | AAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA-GAGAAAATAGGACA | Design primers |
| 4731108 | GCCGGAGCCGGAGCGGCTGCCGGAGCCGGAGCGACTGCTGGAGCCGGAGCGGCT | Design primers |
| 4761128 | GATAGGA-GATAGGA-GATAGGA-GATAGGA | Design primers |
| 4761161 | GAAGATA-GAAGATA-GAAGATA-GAAGATA-GAAGATA | Design primers |
| 4764127 | ATAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG-GTAGGAAATAGGTAG | Design primers |
| 4789507 | GTTAGGAGATAGAA-GATAGGAGATAGAA-GATAGGAGATAGAA-GATAGGAGATAGAA | Design primers |
| 4999587 | TAGGGGCGGATTTCTA-TAGGGGCGGGTTTCTA-TAGGGGCGGGTTTCTA-TAGGGGCGGGTTTCTA-TAGGGGCGGGTTTCTA-TAGGGGCGGGTTTCTA | Design primers |
| 5037263 | CACGGCGACCAACACGCCGACCAACACGCCGACCAA | Design primers |
| 5037642 | CACGGCGACCAACACGCCGACCAACACGCCGACCAA | Design primers |
| 5037689 | CCACCAACACGCCAACCAACACGCCGACCAACACGCCGACCAACACGC | Design primers |
| 5038044 | CACGGCGACCAACACGCCGACCAACACGCCGACCAA | Design primers |
| 5038091 | CCACCAACACGCCAACCAACACGCCGACCAACACGCCGACCAACACGC | Design primers |
| 5038140 | CACGGCTACCAACACGCC-CACGGCTACCAACACGCC-CACGGCTACCAACACGCC | Design primers |
| 5038608 | CTATTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC | Design primers |
| 5038665 | TATCTCC-TATCTCC-TATCTCC-TATCTCC-TATCTCC | Design primers |
| 5044641 | ACGCCAACCGGCACGCGCACCGCTACGCCAACCGGCACGCGCACCACCACACCGACCGGCACGCGCACCGCTACGCCAACCGGCACGCGCACCACCACACCGACCGGCACGCGCACCGCTACGCCAACCGGCACGCGCACTGCT | Design primers |
| 5249363 | GATAGGAGATAGAA-GATAGGAGATAGAA-GATAGGAGATAGGA | Design primers |
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