Microsatellites /Tandem Repeats database

Genome: Isoptericola variabilis 225

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
19181AGCGCTGGAGTTGGCGAGGT-AGCGCTGGAGTTGGCGAGGT-AGCGCTGGGCTTGGCGAGGT-AGCGCTGGGCTTGGCGAGGT-AGCGCTGGGCTTGGCGAGGT-AGCGCTGGGCTTGGCGAGGT-AGCGCTGGGCTTGGCGAGGT-AGCGCTGGAGTTGGCGAGGT-AGCGCTGGGCTTGGCGAGGTDesign primers
42998CGCGCTACCTCGGCGAAAAACGCGCTACCTCGGCGAGAGACGCGCTACCTCGGCGAGAGACGCGCTACCTCGGCGAAAAGDesign primers
127096AGAGCCTGAGGATCCGACAAAGGACCCTGAGGATCCGACAAAGGACCCTGAGGATCCGACAAADesign primers
143209CGCGGGTGCCGGCGCGGGTGCTGGCGCGGGCGCCGGDesign primers
148139GCGCTACTTCGCGCCGGCCC-GCGCTACTTCGCGCCGGCCC-GCGCTACTTCGCGTCGGCTCDesign primers
161288GTAGCGCACCATCTCGCGAG-GTAGCGCTGCATCTCGCGAG-GTAGCGCTGCATCTCGCGAG-GTAGCGCTGCATCTCGCGAGDesign primers
206527TCGCCGAGCGCGACGCCGAGCGCGGCGCCGAGCGCGDesign primers
245417GGCGACGGTGACGGCCCGGGTGACGGTGACGGCCCGGGTGACGGTGACGGCCCGDesign primers
245508GCGACGGCA-ACGACGGCA-CCGACGGCA-ACGACGGCA-ACGACGGCA-ACGACGGCADesign primers
245564GACGGCACG-GACGGCACG-GACGGCACGDesign primers
255846GCCGTGAGC-GCCGTGAGC-GCCGTGAGC-GCCGTGAGCDesign primers
269030CGACCCCCGCTC-CCACCCCCGCTC-CCACCCCCGCTC-CCACCCCCGCTCDesign primers
275833TTCCCGCGCTACTTCGCGGACTCGCGCGCTACTTCGCGGACTCGCGCGCTACTTCGCGGADesign primers
344016CGAGGTAGCGCACTTCTCGC-CGAGGTAGCGCACTTCTCGC-CGAGGTAGCGCGATTCTCGC-CGAGGTAGCGCGTTTCTCGCDesign primers
467221CGCGGA-CGCGGA-CGCGGA-CGCGGADesign primers
482854GTGCGCTACCTCGCGGGGTGGGGCGCTACCTCGCGGGGTGGGGCGCTACCTCGCCGGGTGDesign primers
511769CGCGGCGAGGTAGCGCTCGGCTCGGCGAGGTAGCGCACGGCTCGGCGAGGTAGCGCTCGGDesign primers
519404ACCCGCCGAGGTAGCGCTCC-GCACGCCGAGGTAGCGCTCC-GCTCGCCGAGGTAGCGCTCC-GCTCGCCGAGGTAGCGCTCC-GCTCGCCGAGGTAGCGCTCCDesign primers
538826CCCGCGAGGTAGCGCTCCACCCGCCGAGGTAGCGCTCCACCCGCCGAGGTAGCGCTCCACDesign primers
587658CGCGAAACGCGCTACCTCGG-CGGGGAACGCGCTACCTCGG-CGGGGAACGCGCTACCTCGG-CGGGGAACGCGCTACCTCGGDesign primers
602748CCGACTCGCCGAGGTAGCGC-TCGGCTCGCCGAGGTAGCGC-TCGGCTCGCCGAGGTAGCGC-TCGGCTCGCCGAGGTAGCGCDesign primers
631926CGGTGCCCCGGACGC-CGGTGCCCCGGACGC-CGGTGTCCCGGACGCDesign primers
646174CGAGCGCGACGTCGCCTG-CCAGCGCGACGTCGCCTG-CCAGCGCGACGTCGCCTG-CCAGCGCGACGTCGCCTGDesign primers
677729GCGCTCGGCGCCGCGACGTAGCGCTCGGCGTCGCGACATAGCGCTCGGCGCCGCGACATAGCGCTCGGCGCCGCGACATAGCGCTCGGCGCCGCGGCGTCDesign primers
682214CCGTTGCCGTTC-GCGTTGCCGTTC-GCGTTGCCGTTCDesign primers
878499CGCCCGACGTGCCGACCGACGTGCCGACCGACGTGCDesign primers
909176GCCCCGAGCGGGCCGAGGGCGCCGAGCGGGCCGAGGGCGCCGAGCGGGCCGAGGDesign primers
988449CGCGAGGTAGCGCACGATTCGCCGAGGTAGCGCACGATTCGGCGAGGTAGCGCACGATTCDesign primers
1047486CCGCGCTACCTCGCGAGAGAACGCGCTACGTCGCGAGAGAACGCGCTACCTCGCGGGAGADesign primers
1096840GCGAGGTAGCGCTGCGCCCG-GCGAGGTAGCGCTGCGCCCG-GCGAGGTAGCGCTGTGCCGGDesign primers
1100174TGGCGGCAGCAGCTCGGGCGGCAGCAGCTCGGGCGGCAGCAGCTCDesign primers
1110644TTCTCGCCGAGGTAGCGCAC-CTCCCGCCGAGGTAGCGCAC-CTCCCGCCGAGGTAGCGCAC-CTCCCGCCGAGGTAGCGCACDesign primers
1116283CGGCGACGACCTCGGTGACGACCTCGGTGACGACCTDesign primers
1194303GCGCCGAGGTAGCGCACGATCCGGCGAGGTAGCGCACGATCCGCCGAGGTAGCGCACGATDesign primers
1288051CACCCCGCA-CACCCCGCA-CACCCCGCADesign primers
1332936GGCGGTCCGCGTCCGGGCGGTCCCCGTCCGGGCGGTCCGCGCCCGDesign primers
1464893CTGCCCGACGATCTGCCTGACGATCGGCCCGACGATCTGCCCGACGATCTGCCCGACGATCTGCCCGACGATCTGCCTGACGATDesign primers
1557650GGA-CGA-CGA-CGA-GGA-CGA-GGA-CGA-GGA-CGA-GGA-CGADesign primers
1693577CGCCCGACCACC-TGCCCGACCACC-TGCCCGACCACCDesign primers
1908416CGCACCGGG-CGCACCGGG-CGCACCGGGDesign primers
1954964GTCGGACGGCCCGTCGGACGGCCGGTCGGACGGCGCDesign primers
2030550TCGCCCGACGACGGC-GCGCCCGACGACGGC-GCGCCCGACGACGGCDesign primers
2071494GACGGGACCGAGGTC-GACGGGACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTC-GACGGCACCGAGGTCDesign primers
2100695CCACCGCGAGGTAGCGCGTTCTTCCGCGAGGTAGCGCGTTCTTCCGCGAGGTAGCGCGTTDesign primers
2100802GCGCTACCTCGACGGAGAACGCGCTACCTCGGCAGAGAACGCGCTACCTCGGCGGAGAACDesign primers
2181491GCCGACGTCCCCGCCGACGTGCCCGCCGACGTCCCCDesign primers
2224436CGGGTCGACGCGGGGTCGACGCAGGGTCGACGCDesign primers
2259572CCGCCGAGGTAGCGCTCCAC-CCGCCGAGGTAGCGCTCCAC-CCGCCGAAGTAGCGCACCACDesign primers
2474676GGT-CGT-GGT-GGT-GGT-CGT-GGT-CGT-GGT-CGT-GGT-CGTDesign primers
2526279GTGCGTGCGCTACCTCGGCG-CGGCGTGCGCTACCTCGGCG-CGGCGTGCGCTACCTCGGCGDesign primers
2543690CGAGGTAGCGCGTCCTTGCGCGAGGTAGCGCGTTCTTTCGCGAGGTAGCGCATCCTTGCGDesign primers
2694189CCCGCGAGGTAGCGCGCTTC-ACCGCGAGGTAGCGCGTTTC-ACCGCGAGGTAGCGCGTTTC-ACCGCGAGGTAGCGCGTTTC-ACCGCGAGGTAGCGCGTTTCDesign primers
2708146CGGCAC-CGGCAC-CGGCAC-CGGCACDesign primers
2715025TTCGCGTGCTACCTCGCCGGTTCCCGCGCTACCTCGCCGGTTCCCGCGCTACCTCGCCGGDesign primers
2736914GCCGAGGTAGCGCTGCGCCT-CGCGAGGTAGCGCTGCGCCT-CGCGAGGTAGCGCTGCGCCT-CGCGAGGTAGCGCTGCGCCT-CGCGAGGTAGCGCTGCGCCTDesign primers
2737137GCGGCGCGGCAAGCGCTACC-TCGGCGCGGCAAGCGCTACC-TCGGCGCGGCGAGCGCTACC-TCGGCGCGGCGAGCGCTACC-TCGGCGCGGCGAGCGCTACCDesign primers
2738245GAACGACGCGCTACTTCGGCGAACGACGCGCTACCTCGCCGGACGCCGCGCTACTTCGGCDesign primers
2889780GCGAGGTAGCGCACCACCCG-CCGAGGTAGCGCACCACCCG-CCGAGGTAGCGCACCGCCCG-CCGAGGTAGCGCACCGCCCGDesign primers
2907971GCGCTACTTCGCCGGGTCGGGCGCTACTTCGCCGCCTCGGGCGCTACTTCGCCGGCTCGGDesign primers
2912463CCACCCGCGAGGTAGCGCTC-CACCCCGCGAGGTAGCGCTC-CACCCCGCGAGGTAGCGCTC-CACCCCGCGAGGTAGCGCTCDesign primers
2913997GCGGAGCGCTACCTCGCGGCGTGCAGCGCTACCTCGCGGCGTGCAGCGCTACCTCGCGGCDesign primers
2915373CGTACGACC-CGTACGACC-CGTACGACC-CGTACGACCDesign primers
2925480CCTGGCGAGGTAGCGCGTTTCGTCGCGAGGTAGCGCGTTTCGTCGCGAGGTAGCGCGTTTDesign primers
2927716TCGTCGGCCGCGTCGTCGCCCGCGTCGTCGGCCTCGDesign primers
2964750GATTCACCCGCCGAGGTAGC-GCTGCACCCGCCGAGGTAGC-GCTGCACCCGCCGAGGTAGC-GCTGCACCCGCCGAGGTAGCDesign primers
3005365GGAGCGCTACTTCGGCGAGTCCAGCGCTACTTCGGCGAGTCGAGCGCTACCTCGGCGAGTDesign primers
3117237GACGCGCTACCTCGGCGCGCGGTGCGCTACCTCGGCGCGCGGTGCGCTACCTCGGCGCGCDesign primers
3135646GCCGGCTCCTCGACAGGT-GCCGGCTCCTCGACAGGT-GCCGGCTTCTCGACAGGTDesign primers
3213130CCACGGCGA-CCACGGCGA-CCACGGCGADesign primers
3286209ACGCGCTACCTCGCCGGACCAAGCGCTACCTCGCCGGACCAAGCGCTACCTCGCCGGATCDesign primers

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