This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 81979 | ATAAATAC-ATAAATAT-ATAAATAT-ATAAATAT-ATAAATAT-ATAAATAT | Design primers |
| 141527 | TTTAATCTTATTTAATTTTATTTAATTTTATTTAATCTTATTTAATCTTATTTAATCTTATTTAATCTTATTTAATCTTATTTAATCTTATTTAATTTTATTTAATCTTATTTAATCTTATTTAATCTTATTTAATCTTATTTAATCTTG | Design primers |
| 144225 | CTTTTTTAAACTCTC-TTTTTTTAAACTCTC-TTTTTTTAAACTCTC | Design primers |
| 144271 | TTTTTTGAACTCTCT-TTTTTTGAACTCTCT-TTTTTTGAACTCTTT | Design primers |
| 202636 | TAGAACAAGAACAACAAAAGA-CAGAACAAGAACAACAAAAGA-CAGAACAAGAAAAACAAAAGA | Design primers |
| 252616 | TTAATGT-TTAATGT-TTAATGT-TTAATGT | Design primers |
| 372714 | TGATTGAA-TGATTGAA-TGATTGAA | Design primers |
| 464558 | TTTTTGATCAAGCGGTTTTTGATCAAGGGGCTTTTGATCAAGCGG | Design primers |
| 476110 | TCTTTTTAAACCTTTCTTTTTTTTTAAACCTTTCTTTTTTTTTAAACCTTTCTT | Design primers |
| 522848 | TCACAGAATTAA-ACACAGAATTAA-ACACAGAATTAA-ACACAGAATTAA | Design primers |
| 560096 | AAATTTTAAGA-TAATTTTAAGA-TAATTTTAAGA | Design primers |
| 711002 | AGTTCTTTATTCTTTAATTCTTTATTCTTTAATTCTTTATTCTTT | Design primers |
| 721482 | GATCATGATGATTTGAGAGTT-AATTATGATGATTTGAGAGTT-AATTATGATGATTTGAGAGTT-AATTATGATGATTTGAGAGTT-AATTATGATGATTTGAGAGTT | Design primers |
| 753029 | ATTCGTATTTTCCTGTGAGAT-CATCGTATTTTCCTGTGAGAT-CATCGTATTTTCCTGTGAGAT-CATCGTATTTTCCTGTGAGAT-CATCGTATTTTCCTGTGAGAT-CATCGTATTTTCCTGTGAGAT-CATCGTATTTTCCTGTGAGAT-CATCGTATTTTCCTGTGAGAT | Design primers |
| 772187 | ATCATTTTAAATCCT-TTCATTTTAAATCCT-TTCATTTTAAATCCT-TTCATTTTAAATCCT | Design primers |
| 928901 | CACAAACGCCTCCACGAACGCCTCCACAAACGCTTC | Design primers |
| 992862 | TGGTGTGATATAGAGA-TAGTGTGATATAGAGA-TAGTGTGATATAGAGA-TAGTGTGATATAGAGA-TAGTGTGATATAGAGA-TAGTGTGATATAGAGA | Design primers |
| 1355297 | CGGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA | Design primers |
| 1359963 | CATTCAAT-CATTCAAT-CATTCAAT | Design primers |
| 1399000 | AAAACC-CAAACC-CAAACC-CAAACC-CAAACC-CAAACC | Design primers |
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