Microsatellites /Tandem Repeats database

Genome: Helicobacter pylori F57

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
22994CTAAAAGTTGGAAGC-GTAAAAGTTGGAAGC-GTAAAAGTTGGAAGCDesign primers
95118ATGGGAGAT-ATGGGAGAT-ATGGGAGATDesign primers
367653GATGGAGGC-GATGGAGGC-GATGGAGGCDesign primers
383037GTTTCTTTTTCTTGTGGG-ATTTCTTTTTCTTGTGGG-ATTTCTTTTTCTTGTGGG-ATTTCTTTTTCTTGTGGGDesign primers
483825CCTTTTATCACATTTTATCACATTTTATCADesign primers
515150TCTTTATTTTTATCTTTATTTTTGCCTTTATTTTTADesign primers
676453GGCAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCAC-AGGAAAATACGATGAACTCACDesign primers
679289TTTGCGCGATTT-TTTGCGCGATTT-TTTGCGCGTTTTDesign primers
707978TTCTCAAATCATCATAATTAA-CCCTCAAATCATCATAATTAA-CCCTCAAATCATCATAATTAA-CCCTCAAATCATCATAATTAADesign primers
855133TTTTAATTCTGT-GTTTAATTCTGT-GTTTAATTCTGT-GTTTAATTCTGTDesign primers
910243TTTTAATTCTGT-GTTTAATTCTGT-GTTTAATTCTGTDesign primers
954807TTTAAAAAAAAGAGGGT-TTAAAAAAAAAGAGGGT-TTAAAAAAAAAGAGGGT-TTAAAAAAAAAGAGGGT-TTAAAAAAAAAGAGGGT-TTAAAAAAAAAGAGGGT-TTAAAAAAAAAGAGGGT-TTAAAAAAAAAGAGGGTDesign primers
954960TAAAAAGAAAGAGTTC-AAAAAAGAAAGAGTTC-AAAAAAGAAAGAGTTC-AAAAAAGAAAGAGTTCDesign primers
955149TTAAAAAAAAAGAGAG-TTTAAAAAAAAGAGAG-TTTAAAAAAAAGAGAG-TTTAAAAAAAAGAGAG-TTTAAAAAAAAGAGAG-TTTAAAAAAAAGAGAGDesign primers
993689TCTTTATTTTTATCTTTATTTTTGCCTTTATTTTTADesign primers
1051383CAAGATT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAAT-AAAGAATDesign primers
1051489AAGAATAAAGATTAAAGATTAAAGAATAAAGAATAAAGAATAAAGATTAAAGATTAAAGAATAAAGATTAAAGATTAAAGAATAAAGAATAAAGAATAAAGATTAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGATTAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATADesign primers
1056089AAAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAADesign primers
1056449CATCCAAT-CATCCAAT-CATCCAATDesign primers
1228274CTTGTCTTTTGTTTTTCTTGT-TCTGTCTTTTGTTTTTCTTGT-TCTGTCTTTTGTTTTTCTTGT-TCTGTCTTTTGTTTTTCTTGT-TCTGTCTTTTGTTTTTCTTGTDesign primers
1229645CTTTTTTAACCAAATCTTTCTGTTCTTTAACCAAATCTTTCTGTTCTTTAACCAAATCTTTCTDesign primers
1287935AAAAAAAAGAGGGTTT-AAAAAAAAGAGAGTTT-AAAAAAAAGAGAGTTT-AAAAAAAAGAGAGTTT-AAAAAAAAGAGAGTTT-AAAAAAAAGAGAGTTT-AAAAAAAAGAGAGTTT-AAAAAAAAGAGAGTTTDesign primers
1290567CCAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAADesign primers
1296140TCTTGTTTAGTTTCTTGTTTATTTTCTTGTTTATTTDesign primers
1350063TT-AT-AT-TT-AT-GT-AT-TT-AT-GT-AT-TT-AT-GT-AT-TT-AT-GT-AT-TT-AT-GT-AT-TT-AT-GT-AT-TT-AT-GT-AT-TT-AT-GT-AT-TTDesign primers
1366862AAACCCGAGCCTAAGCCCGAGCCTAAGCCCGAGCCTDesign primers
1397563AAGAATAAAGATTAAAGATTAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATAAAGAATADesign primers
1397648AGATTAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAADesign primers
1402079AAAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAA-ATAAAGCTTTAAATTAADesign primers
1402439CATCCAAT-CATCCAAT-CATCCAATDesign primers
1477700GCGTTTTTA-GCGTTTTTA-GCGTTTTTADesign primers
1477730TTTTTAGTG-TTTTTAGTA-TTTTTAGTA-TTTTTAGTA-TTTTTAGTA-TTTTTAGTADesign primers

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