This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 165127 | TTCTTTAATGAAATCTTTCTG-TTCTTTAACCAAATCTTTCTG-TTCTTTAACCAAATCTTTCTG-TTCTTTAACCAAATCTTTCTG | Design primers |
| 165273 | TTGTCCTTTGTTTTTCTTGTT-CTGTCTTTTGTTTTTCTTGTT-CTGTCTTTTGTTTTTCTTGTT-CTGTCTTTTGTTTTTCTTGTT | Design primers |
| 209726 | TTTCTTCTGTAT-TTTCTTCTGTGA-TTTCTTCTGTGA-TTTCTTCTGTGA-TTTCTTCTGTGA-TTTCTTCTGTGA | Design primers |
| 272916 | GTTTGGTTG-GTTTGGTTG-GTTTGGTTG | Design primers |
| 347815 | AATGCGGGGCAAT-AATGCGGGGCAAT-AATGCGGGGTAAT-AATGCGGGGTAAT | Design primers |
| 369797 | GTTTCTTTAACCTCTTCTTTTTCT-TCTTCTTTAACCTCTTCTTTTTCT-TCTTCTTTAACCTCTTCTTTTTCT-TCTTCTTTAACCTCTTCTTTTTCT | Design primers |
| 421097 | ACTTCTATATCACACC-ACTTCTATATCACACC-ACTTCTGTATCACACC-ACTTCTGTATCACACC-ACTTCTGTATCACACC | Design primers |
| 469973 | CCTTTTATCACATTTTATCACATTTTATCA | Design primers |
| 541758 | TCACAGAATTAA-ACACAGAATTAA-ACACAGAATTAA | Design primers |
| 579048 | AAAATTTAAGA-TAATTTTAAGA-TAATTTTAAGA-TAATTTTAAGA-TAATTTTAAGA-TAATTTTAAGA | Design primers |
| 618058 | GCTAAAAAAGAAATT-CCTAAAAAAGAAATT-CCTAAAAAAGAAATT-CCTAAAAAAGAAATT-CCTAAAAAAGAAATT-CCTAAAAAAGAAATT-CCTAAAAAAGAAATT-CCTAAAAAAGAAATT | Design primers |
| 710806 | CAAATATCTCAATAA-TAAATATCTCAATAA-TAAATATCTCAATAA-TAAATATCTCAATAA-TAAATATCTCAATAA-TAAATATCTCAATAA-TAAATATCTCAATAA-TAAATATCTCAATAA-TAAATATCTCAATAA-TAAATATCTCAATAA | Design primers |
| 772444 | ACCCCAATGAAC-CCCCCAATGAAC-CCCCCAATGAAC | Design primers |
| 773130 | AAAGCGCGCAAAAAATCGCGCAAAAAATCGCGCAAA | Design primers |
| 775914 | ATTCGTATTTTCTTGTGAGAT-CATCGTATTTTCTTGTGAGAT-CATCGTATTTTCTTGTGAGAT-CATCGTATTTTCTTGTGAGAT-CATCGTATTTTCTTGTGAGAT-CATCGTATTTTCTTGTGAGAT | Design primers |
| 795019 | ATCATTTTAAATCCT-TTCATTTTAAATCCT-TTCATTTTAAATCCT-TTCATTTTAAATCCT-TTCATTTTAAATCCT | Design primers |
| 904503 | TTTTAAACATTTTTAAACTTTTTTAAACTT | Design primers |
| 937747 | TTCAAAAAAAAGAGTTTTAAAAAAAAGAGTTTTAAAAAAAAGAGT | Design primers |
| 937793 | TTAAAAAGAAAGAGTT-TTAAAAAGAAAGAGTT-TTAAAAAGAAAGAGTT | Design primers |
| 1039232 | CATTCAAT-CATTCAAT-CATCCAAT-CATTCAAT-CATCCAAT-CATTCAAT | Design primers |
| 1039288 | CATTCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG | Design primers |
| 1091720 | TCTCAAATTATCATAATTAAC-CCTCAAATCATCATAATTAAC-CCTCAAATCATCATAATTAAC-CCTCAAATCATCATAATTAAC-CCTCAAATCATCATAATTAAC | Design primers |
| 1211475 | TTCTTTAATGAAATCTTTCTG-TTCTTTAACCAAATCTTTCTG-TTCTTTAACCAAATCTTTCTG-TTCTTTAACCAAATCTTTCTG | Design primers |
| 1211621 | TTGTCCTTTGTTTTTCTTGTTCTGTCTTTTGTTTTTCTTGTTCTGTCTTTTGTTTTTCTTGTT | Design primers |
| 1239256 | TCATTTATTTG-GCATTTATTTG-GCATTTATTTG | Design primers |
| 1271455 | GTTTAAAAAAGAAAGCTTTAAAAAAGAAAGTTTTAAAAAAGAAAG | Design primers |
| 1274029 | CCAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA-ATAAGATTAA | Design primers |
| 1285130 | AAAAAAGAG-AATAAAGAG-AATAAAGAG-AATAAAGAG-AATAAAGAG-AATAAAGAG | Design primers |
| 1353583 | AAACCC-AAACCC-AAACCC-AAACCC | Design primers |
| 1379760 | AAAGAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA-ATAAAAGA | Design primers |
| 1383893 | CATTCAAT-CATTCAAT-CATCCAAT-CATTCAAT-CATCCAAT-CATTCAAT | Design primers |
| 1383949 | CATTCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG-TAATCAAG | Design primers |
| 1406794 | TGTTTTCAT-TGTTTTCAT-TGTTTTCAT-TGTTTTCAT | Design primers |
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